Wall clock time and date at job start Mon Mar 30 2020 01:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47217 * 2 1 4 4 C 1.53002 * 115.55853 * 34.31220 * 3 2 1 5 5 C 1.52999 * 117.50080 * 248.62644 * 3 2 1 6 6 C 1.52999 * 117.50292 * 180.02562 * 3 2 1 7 7 H 1.08996 * 117.52238 * 214.97275 * 6 3 2 8 8 N 1.46908 * 117.49578 * 0.02562 * 6 3 2 9 9 C 1.46894 * 110.99837 * 205.01707 * 8 6 3 10 10 H 1.09002 * 109.47104 * 324.99694 * 9 8 6 11 11 C 1.52997 * 109.47515 * 84.99962 * 9 8 6 12 12 C 1.50708 * 109.46991 * 205.00145 * 9 8 6 13 13 H 1.08000 * 119.99723 * 359.97438 * 12 9 8 14 14 C 1.37873 * 119.99930 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00195 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99968 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46959 * 89.99935 * 16 14 12 18 18 H 1.48491 * 109.47193 * 210.00326 * 16 14 12 19 19 H 1.48498 * 109.47096 * 330.00479 * 16 14 12 20 20 H 1.09001 * 109.47214 * 60.00081 * 1 2 3 21 21 H 1.09005 * 109.47326 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47207 * 299.99709 * 1 2 3 23 23 H 1.09008 * 109.46947 * 239.99943 * 2 1 3 24 24 H 1.08993 * 109.47530 * 120.00485 * 2 1 3 25 25 H 1.08999 * 109.46922 * 205.68979 * 4 3 2 26 26 H 1.08999 * 109.47520 * 325.68887 * 4 3 2 27 27 H 1.09002 * 109.47254 * 85.69288 * 4 3 2 28 28 H 1.09000 * 117.50164 * 145.02136 * 5 3 2 29 29 H 1.08997 * 117.51532 * 359.97438 * 5 3 2 30 30 H 1.00898 * 110.99816 * 81.05788 * 8 6 3 31 31 H 1.09002 * 109.47153 * 59.99762 * 11 9 8 32 32 H 1.09001 * 109.46832 * 299.99953 * 11 9 8 33 33 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 34 34 H 0.97006 * 120.00358 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4449 0.7781 5 6 2.7418 1.9437 -1.2638 6 6 3.5550 1.6562 -0.0006 7 1 3.9433 2.5108 0.5534 8 7 4.4086 0.4606 -0.0017 9 6 5.7262 0.7540 0.5778 10 1 6.0205 1.7701 0.3150 11 6 5.6548 0.6212 2.1003 12 6 6.7413 -0.2191 0.0357 13 1 6.4379 -0.9796 -0.6685 14 6 8.0573 -0.1384 0.4387 15 7 8.4267 0.7874 1.2966 16 14 9.3155 -1.3450 -0.2326 17 1 9.9201 -0.7917 -1.4710 18 1 10.3781 -1.5671 0.7806 19 1 8.6483 -2.6352 -0.5413 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8899 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.3351 3.4442 0.3696 26 1 0.1338 2.1707 0.6909 27 1 1.4776 2.4339 1.8281 28 1 2.5946 2.9875 -1.5409 29 1 2.8407 1.2459 -2.0952 30 1 4.4991 0.0818 -0.9325 31 1 5.3604 -0.3949 2.3630 32 1 4.9206 1.3251 2.4923 33 1 6.6326 0.8385 2.5302 34 1 9.3526 0.8440 1.5805 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397481437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:22 Heat of formation + Delta-G solvation = -8.838756 kcal Electronic energy + Delta-G solvation = -12812.413131 eV Core-core repulsion = 10744.680458 eV Total energy + Delta-G solvation = -2067.732673 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.82640 -36.73498 -34.10932 -32.49934 -29.85607 -28.19781 -27.27427 -24.57356 -22.82599 -21.65993 -19.44135 -18.39014 -16.97292 -16.25839 -15.86433 -15.37014 -15.08903 -14.57954 -14.22599 -13.93317 -13.42150 -13.04406 -12.86399 -12.77713 -12.62717 -12.50541 -12.44496 -12.25552 -12.11772 -11.81426 -11.57133 -11.23412 -10.91874 -10.56999 -10.35044 -8.80132 -8.14899 -6.29672 1.41027 1.42259 1.53122 2.40187 2.93073 3.13426 3.50652 3.90205 4.04605 4.20072 4.34883 4.54404 4.67630 4.79239 4.81522 4.86351 4.95512 5.02260 5.05313 5.10818 5.17398 5.21518 5.32056 5.38629 5.47270 5.50065 5.65632 5.71558 5.84877 6.19579 6.47895 6.77640 6.98651 7.41040 8.90965 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.056843 B = 0.007907 C = 0.007609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.465312 B = 3540.154188 C = 3679.097837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.073 4.073 3 C -0.111 4.111 4 C -0.116 4.116 5 C -0.191 4.191 6 C 0.011 3.989 7 H 0.081 0.919 8 N -0.650 5.650 9 C 0.219 3.781 10 H -0.032 1.032 11 C -0.110 4.110 12 C -0.540 4.540 13 H 0.059 0.941 14 C 0.013 3.987 15 N -0.919 5.919 16 Si 0.964 3.036 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.268 1.268 20 H 0.059 0.941 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.331 0.669 31 H 0.026 0.974 32 H 0.018 0.982 33 H 0.057 0.943 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 1.038 -2.981 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.113 4.113 4 C -0.173 4.173 5 C -0.229 4.229 6 C -0.101 4.101 7 H 0.099 0.901 8 N -0.279 5.279 9 C 0.110 3.890 10 H -0.014 1.014 11 C -0.168 4.168 12 C -0.578 4.578 13 H 0.077 0.923 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.789 3.211 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.192 1.192 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.150 0.850 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.695 0.842 -2.285 12.926 hybrid contribution 1.535 0.120 -0.835 1.752 sum -11.160 0.961 -3.120 11.628 Atomic orbital electron populations 1.21819 0.94294 1.01797 1.02210 1.20794 0.96104 0.92971 1.01174 1.21899 0.92835 0.97146 0.99380 1.21462 0.99999 0.96972 0.98877 1.23702 1.05341 1.02150 0.91745 1.22625 0.92273 0.93636 1.01524 0.90126 1.60353 1.14535 1.27132 1.25853 1.18915 0.84651 0.92946 0.92438 1.01409 1.21517 0.99566 0.97841 0.97905 1.21595 0.93742 1.16093 1.26411 0.92270 1.25751 1.00352 0.97350 0.95174 1.70027 1.17823 1.34825 1.33107 0.85461 0.78328 0.79246 0.78016 1.20021 1.20738 1.19238 0.92166 0.92398 0.91737 0.92996 0.93228 0.92261 0.89663 0.93067 0.88073 0.88947 0.85023 0.95473 0.96274 0.92437 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.92 71.98 0.64 -2.40 16 2 C -0.07 -2.07 5.58 30.59 0.17 -1.90 16 3 C -0.11 -3.29 2.47 -52.18 -0.13 -3.41 16 4 C -0.12 -2.81 9.49 71.98 0.68 -2.12 16 5 C -0.19 -5.70 9.52 30.58 0.29 -5.41 16 6 C 0.01 0.40 5.72 44.90 0.26 0.66 16 7 H 0.08 3.28 7.77 -2.39 -0.02 3.26 16 8 N -0.65 -28.66 5.95 -473.38 -2.82 -31.48 16 9 C 0.22 11.56 2.50 44.17 0.11 11.68 16 10 H -0.03 -1.85 7.73 -2.39 -0.02 -1.87 16 11 C -0.11 -5.72 9.19 71.98 0.66 -5.05 16 12 C -0.54 -30.36 8.59 25.60 0.22 -30.14 16 13 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 14 C 0.01 0.73 5.30 84.65 0.45 1.17 16 15 N -0.92 -53.82 11.32 21.44 0.24 -53.58 16 16 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 22 H 0.06 1.25 6.45 -2.39 -0.02 1.23 16 23 H 0.05 1.53 7.90 -2.38 -0.02 1.51 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.32 7.90 -2.39 -0.02 1.30 16 26 H 0.08 1.68 5.59 -2.39 -0.01 1.67 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.10 2.67 8.05 -2.39 -0.02 2.65 16 29 H 0.09 2.70 7.99 -2.39 -0.02 2.68 16 30 H 0.33 14.33 8.01 -89.70 -0.72 13.61 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 33 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 34 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -59.98 273.57 3.14 -56.84 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.34 Total: 19.18 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 3.36 Total: -36.93 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.57 Total: -85.05 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -59.98 3.14 -56.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397481437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.001 kcal (2) G-P(sol) polarization free energy of solvation -59.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds