Wall clock time and date at job start Mon Mar 30 2020 01:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47095 * 2 1 4 4 C 1.53002 * 115.55771 * 34.31621 * 3 2 1 5 5 C 1.53069 * 117.51660 * 248.60884 * 3 2 1 6 6 C 1.53000 * 59.98584 * 252.52266 * 5 3 2 7 7 H 1.09002 * 117.49833 * 107.50105 * 6 5 3 8 8 N 1.46905 * 117.49884 * 252.49826 * 6 5 3 9 9 C 1.46896 * 110.99633 * 223.74313 * 8 6 5 10 10 H 1.08996 * 109.47072 * 35.00413 * 9 8 6 11 11 C 1.53002 * 109.47663 * 274.99975 * 9 8 6 12 12 C 1.50702 * 109.46606 * 155.00118 * 9 8 6 13 13 H 1.07995 * 120.00237 * 0.02562 * 12 9 8 14 14 C 1.37886 * 119.99779 * 179.97438 * 12 9 8 15 15 N 1.31514 * 119.99982 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99813 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47446 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47174 * 120.00490 * 16 14 12 19 19 H 1.48508 * 109.47168 * 240.00251 * 16 14 12 20 20 H 1.08997 * 109.47279 * 59.99412 * 1 2 3 21 21 H 1.08995 * 109.46948 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47132 * 299.99576 * 1 2 3 23 23 H 1.09005 * 109.47132 * 240.00424 * 2 1 3 24 24 H 1.08997 * 109.47279 * 120.00588 * 2 1 3 25 25 H 1.09004 * 109.46980 * 205.68498 * 4 3 2 26 26 H 1.08995 * 109.47123 * 325.68334 * 4 3 2 27 27 H 1.09002 * 109.47547 * 85.68989 * 4 3 2 28 28 H 1.09008 * 117.49334 * 145.03821 * 5 3 2 29 29 H 1.08999 * 117.53397 * 359.97438 * 5 3 2 30 30 H 1.00898 * 110.99399 * 99.79573 * 8 6 5 31 31 H 1.09000 * 109.46781 * 300.00927 * 11 9 8 32 32 H 1.09004 * 109.46700 * 60.00152 * 11 9 8 33 33 H 1.09002 * 109.47316 * 180.02562 * 11 9 8 34 34 H 0.97001 * 120.00021 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1852 2.4448 0.7782 5 6 2.7425 1.9442 -1.2640 6 6 3.5550 1.6562 0.0000 7 1 4.1884 0.7691 0.0000 8 7 4.0776 2.8078 0.7475 9 6 5.4693 2.5805 1.1592 10 1 5.9872 2.0090 0.3890 11 6 5.4911 1.8000 2.4750 12 6 6.1594 3.9066 1.3502 13 1 5.6182 4.8260 1.1830 14 6 7.4816 3.9458 1.7395 15 7 8.1405 2.8261 1.9436 16 14 8.3369 5.5894 1.9770 17 1 7.3836 6.6902 1.6857 18 1 8.8109 5.7026 3.3797 19 1 9.4963 5.6821 1.0537 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8901 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.3351 3.4443 0.3698 26 1 0.1339 2.1706 0.6909 27 1 1.4776 2.4338 1.8282 28 1 2.5955 2.9882 -1.5408 29 1 2.8420 1.2467 -2.0957 30 1 3.4944 3.0166 1.5440 31 1 4.9731 2.3716 3.2450 32 1 4.9919 0.8409 2.3367 33 1 6.5238 1.6318 2.7806 34 1 9.0708 2.8537 2.2171 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397481439.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:23 Heat of formation + Delta-G solvation = -8.449120 kcal Electronic energy + Delta-G solvation = -12793.070827 eV Core-core repulsion = 10725.355050 eV Total energy + Delta-G solvation = -2067.715777 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.87756 -36.79454 -34.15642 -32.49256 -29.14763 -28.93552 -27.24585 -24.58790 -22.77699 -21.64668 -19.63895 -18.27868 -16.94513 -16.41815 -16.11581 -15.41224 -14.79737 -14.59334 -13.98757 -13.84053 -13.52749 -13.18647 -12.99103 -12.85581 -12.80523 -12.49497 -12.40460 -12.17148 -11.98864 -11.94643 -11.63517 -11.26296 -10.90339 -10.51161 -10.35523 -8.82286 -8.11028 -6.22628 1.41726 1.43026 1.55955 2.43343 2.92196 3.17171 3.43969 3.92392 3.97729 4.17702 4.44017 4.47492 4.61149 4.70720 4.78191 4.83358 4.91636 4.98205 4.99136 5.07208 5.11699 5.16271 5.23373 5.36504 5.40079 5.43521 5.62376 5.67549 5.82828 6.26856 6.65331 6.83207 6.93361 7.47583 8.95018 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067477 B = 0.007561 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.855649 B = 3702.352490 C = 3823.570216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.163 4.163 6 C 0.006 3.994 7 H 0.072 0.928 8 N -0.654 5.654 9 C 0.217 3.783 10 H -0.001 1.001 11 C -0.153 4.153 12 C -0.516 4.516 13 H 0.054 0.946 14 C 0.007 3.993 15 N -0.924 5.924 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.281 1.281 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.332 0.668 31 H 0.032 0.968 32 H 0.023 0.977 33 H 0.062 0.938 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.050 -3.909 -2.429 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.172 4.172 5 C -0.201 4.201 6 C -0.106 4.106 7 H 0.090 0.910 8 N -0.284 5.284 9 C 0.109 3.891 10 H 0.017 0.983 11 C -0.213 4.213 12 C -0.554 4.554 13 H 0.072 0.928 14 C -0.191 4.191 15 N -0.564 5.564 16 Si 0.789 3.211 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.207 1.207 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.694 -3.597 -2.933 13.516 hybrid contribution 0.960 0.028 0.815 1.259 sum -11.734 -3.569 -2.119 12.446 Atomic orbital electron populations 1.21785 0.93911 1.02109 1.02334 1.21079 0.97268 0.92370 1.01625 1.22002 0.92447 0.97376 1.00672 1.21357 0.99881 0.97228 0.98778 1.23393 1.03568 1.01696 0.91450 1.22541 0.92852 0.93702 1.01463 0.90976 1.60424 1.03567 1.36045 1.28352 1.18984 0.84604 0.94371 0.91180 0.98320 1.22243 1.02044 0.97104 0.99900 1.21470 0.96131 0.93126 1.44715 0.92781 1.25754 0.98021 1.00037 0.95248 1.70022 1.10353 1.27697 1.48346 0.85417 0.78175 0.79818 0.77644 1.19317 1.20397 1.20707 0.92249 0.91780 0.91862 0.91760 0.92460 0.92968 0.89443 0.93068 0.89459 0.88264 0.84881 0.94935 0.95829 0.91917 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.92 71.98 0.64 -1.96 16 2 C -0.09 -2.01 6.12 30.59 0.19 -1.82 16 3 C -0.12 -3.53 2.47 -52.16 -0.13 -3.66 16 4 C -0.12 -2.99 8.43 71.98 0.61 -2.38 16 5 C -0.16 -5.13 9.75 30.62 0.30 -4.83 16 6 C 0.01 0.21 5.67 44.92 0.25 0.46 16 7 H 0.07 2.92 7.77 -2.39 -0.02 2.90 16 8 N -0.65 -28.99 6.29 -473.30 -2.98 -31.97 16 9 C 0.22 11.46 2.47 44.17 0.11 11.57 16 10 H 0.00 -0.07 7.73 -2.39 -0.02 -0.09 16 11 C -0.15 -7.64 8.94 71.98 0.64 -6.99 16 12 C -0.52 -29.56 8.84 25.60 0.23 -29.33 16 13 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 14 C 0.01 0.42 5.30 84.66 0.45 0.86 16 15 N -0.92 -54.37 11.32 21.45 0.24 -54.13 16 16 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 21 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 1.09 6.45 -2.38 -0.02 1.07 16 23 H 0.06 1.46 7.90 -2.38 -0.02 1.44 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.45 7.90 -2.39 -0.02 1.43 16 26 H 0.09 1.79 5.58 -2.39 -0.01 1.78 16 27 H 0.05 1.37 7.59 -2.39 -0.02 1.35 16 28 H 0.09 2.86 8.05 -2.38 -0.02 2.84 16 29 H 0.10 2.76 8.05 -2.39 -0.02 2.75 16 30 H 0.33 13.87 6.94 -89.70 -0.62 13.25 16 31 H 0.03 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -60.91 272.17 3.01 -57.90 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.43 Total: 19.49 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.29 Total: -38.08 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.73 Total: -86.10 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -60.91 3.01 -57.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397481439.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.447 kcal (2) G-P(sol) polarization free energy of solvation -60.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds