Wall clock time and date at job start Mon Mar 30 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 113.00816 * 2 1 4 4 C 1.53937 * 113.73533 * 131.63519 * 2 1 3 5 5 N 1.47957 * 86.18181 * 138.08146 * 4 2 1 6 6 C 1.46903 * 110.99836 * 222.42105 * 5 4 2 7 7 C 1.50711 * 109.46830 * 171.45848 * 6 5 4 8 8 H 1.08003 * 119.99905 * 3.96801 * 7 6 5 9 9 C 1.37875 * 119.99781 * 183.95905 * 7 6 5 10 10 N 1.31514 * 119.99995 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99942 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47377 * 90.00290 * 11 9 7 13 13 H 1.48500 * 109.47313 * 210.00086 * 11 9 7 14 14 H 1.48505 * 109.47182 * 330.00368 * 11 9 7 15 15 C 1.47969 * 90.76299 * 335.31072 * 5 4 2 16 16 C 1.52994 * 113.75782 * 270.37309 * 15 5 4 17 17 C 1.53005 * 113.75754 * 139.00712 * 15 5 4 18 18 H 1.08995 * 109.47395 * 307.86615 * 1 2 3 19 19 H 1.08999 * 109.47320 * 67.87142 * 1 2 3 20 20 H 1.09000 * 109.46970 * 187.86651 * 1 2 3 21 21 H 1.09003 * 109.46725 * 172.12981 * 3 2 1 22 22 H 1.08999 * 109.46908 * 292.13078 * 3 2 1 23 23 H 1.08995 * 109.46640 * 52.13280 * 3 2 1 24 24 H 1.08997 * 113.76068 * 252.40137 * 4 2 1 25 25 H 1.09003 * 113.75737 * 23.76137 * 4 2 1 26 26 H 1.08996 * 109.46677 * 291.45447 * 6 5 4 27 27 H 1.08998 * 109.47142 * 51.46206 * 6 5 4 28 28 H 0.96995 * 119.99828 * 179.97438 * 10 9 7 29 29 H 1.09003 * 109.47100 * 164.16421 * 16 15 5 30 30 H 1.09006 * 109.47372 * 284.16369 * 16 15 5 31 31 H 1.09006 * 109.47514 * 44.16556 * 16 15 5 32 32 H 1.08995 * 109.46854 * 323.43963 * 17 15 5 33 33 H 1.08994 * 109.46890 * 83.44244 * 17 15 5 34 34 H 1.08995 * 109.46632 * 203.44266 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1280 1.4083 0.0000 4 6 2.1496 -0.9362 1.0532 5 7 3.1155 -1.3197 0.0001 6 6 3.3459 -2.7705 0.0001 7 6 4.1638 -3.1492 -1.2078 8 1 4.5350 -2.3817 -1.8709 9 6 4.4383 -4.4754 -1.4662 10 7 3.9860 -5.4100 -0.6590 11 14 5.4526 -4.9448 -2.9629 12 1 6.8913 -4.9759 -2.5961 13 1 5.0352 -6.2867 -3.4429 14 1 5.2379 -3.9450 -4.0398 15 6 2.1495 -0.9362 -1.0532 16 6 1.2245 -2.0756 -1.4855 17 6 2.7854 -0.2003 -2.2344 18 1 -0.3634 0.6308 0.8112 19 1 -0.3634 0.3871 -0.9519 20 1 -0.3633 -1.0180 0.1407 21 1 3.2071 1.3448 0.1407 22 1 1.9137 1.8941 -0.9520 23 1 1.6894 1.9892 0.8113 24 1 2.6025 -0.4120 1.8947 25 1 1.4905 -1.7479 1.3612 26 1 3.8829 -3.0530 0.9055 27 1 2.3885 -3.2904 -0.0319 28 1 4.1789 -6.3430 -0.8410 29 1 0.3779 -1.6668 -2.0372 30 1 1.7741 -2.7675 -2.1238 31 1 0.8624 -2.6042 -0.6037 32 1 3.5809 0.4504 -1.8713 33 1 3.2003 -0.9260 -2.9338 34 1 2.0278 0.3990 -2.7393 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:23 Heat of formation + Delta-G solvation = 20.242500 kcal Electronic energy + Delta-G solvation = -13552.118075 eV Core-core repulsion = 11485.646460 eV Total energy + Delta-G solvation = -2066.471615 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.24102 -33.39223 -31.64848 -30.54510 -28.23920 -27.34982 -25.49710 -23.72288 -22.25160 -19.96608 -16.45220 -16.29332 -14.97119 -14.88292 -14.58661 -14.04957 -13.16952 -12.96467 -12.27534 -12.13284 -11.85654 -11.70690 -11.48325 -11.36756 -11.11755 -11.03159 -10.93469 -10.61238 -10.43810 -10.35526 -10.11143 -9.38231 -9.07364 -9.02575 -8.41230 -7.50949 -5.98866 -3.98460 3.33097 3.39268 3.42674 4.45620 4.83218 4.87348 5.29143 5.36776 5.60205 5.82061 5.86054 5.92335 6.00335 6.08431 6.20028 6.23783 6.28629 6.29878 6.37934 6.46874 6.53080 6.64099 6.69137 6.80770 6.96088 7.12505 7.15559 7.46639 7.77977 8.00922 8.27254 8.56310 9.09442 9.64534 11.12427 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.052334 B = 0.010949 C = 0.010406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.901340 B = 2556.597980 C = 2690.224752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 C -0.116 4.116 4 C 0.003 3.997 5 N -0.469 5.469 6 C 0.153 3.847 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.081 3.919 16 C -0.143 4.143 17 C -0.119 4.119 18 H 0.048 0.952 19 H 0.052 0.948 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.023 0.977 27 H 0.012 0.988 28 H 0.260 0.740 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 9.546 -0.270 11.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 C -0.174 4.174 4 C -0.126 4.126 5 N -0.192 5.192 6 C 0.027 3.973 7 C -0.536 4.536 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.010 4.010 16 C -0.201 4.201 17 C -0.176 4.176 18 H 0.067 0.933 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.416 9.600 -0.245 11.025 hybrid contribution -0.162 -1.044 -0.671 1.252 sum -5.579 8.556 -0.916 10.255 Atomic orbital electron populations 1.21746 0.95154 1.01466 1.00853 1.22451 0.94158 0.95453 0.97536 1.21465 1.01374 0.94030 1.00490 1.23882 0.95265 0.97463 0.95984 1.68634 1.29533 1.20308 1.00716 1.20247 0.96591 0.82747 0.97712 1.21100 1.31911 0.91668 1.08962 0.91984 1.24971 0.96294 0.96591 0.96776 1.69959 1.46166 1.00296 1.37513 0.86583 0.80557 0.77648 0.83149 1.20735 1.21396 1.19882 1.22414 0.91886 0.93873 0.92826 1.21906 0.98331 0.98305 1.01557 1.21534 0.99535 0.99543 0.97025 0.93289 0.92942 0.92560 0.91590 0.92927 0.93559 0.90998 0.92492 0.95931 0.97048 0.93078 0.93855 0.90224 0.92907 0.92319 0.92345 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.23 37.16 0.31 -1.58 16 2 C -0.10 -1.56 1.31 -153.57 -0.20 -1.76 16 3 C -0.12 -1.68 7.90 37.16 0.29 -1.38 16 4 C 0.00 0.06 6.74 -2.77 -0.02 0.04 16 5 N -0.47 -10.39 5.89 -223.83 -1.32 -11.71 16 6 C 0.15 4.03 4.22 -4.97 -0.02 4.01 16 7 C -0.50 -13.98 7.82 -34.44 -0.27 -14.25 16 8 H 0.06 1.75 7.01 -52.48 -0.37 1.38 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 11 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.08 1.55 0.91 -130.54 -0.12 1.43 16 16 C -0.14 -2.81 6.29 37.15 0.23 -2.58 16 17 C -0.12 -2.15 8.06 37.16 0.30 -1.85 16 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.06 0.81 6.83 -51.93 -0.35 0.46 16 21 H 0.07 1.04 7.72 -51.93 -0.40 0.63 16 22 H 0.05 0.70 7.57 -51.93 -0.39 0.30 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 25 H 0.06 1.09 7.26 -51.93 -0.38 0.71 16 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.01 0.32 5.49 -51.93 -0.28 0.04 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.04 0.72 7.80 -51.93 -0.41 0.32 16 30 H 0.08 1.80 7.04 -51.93 -0.37 1.43 16 31 H 0.05 1.07 5.64 -51.93 -0.29 0.78 16 32 H 0.06 1.05 7.26 -51.93 -0.38 0.67 16 33 H 0.06 1.15 7.60 -51.93 -0.39 0.75 16 34 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 261.23 15.07 3.94 3.94 Total: -1.00 -29.34 261.23 -6.94 -36.28 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -5.68 Total: -2.79 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 0.41 Total: -16.44 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.58 Total: -37.82 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.34 -6.94 -36.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.524 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds