Wall clock time and date at job start Mon Mar 30 2020 01:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 113.00816 * 2 1 4 4 C 1.53937 * 113.73533 * 131.63519 * 2 1 3 5 5 N 1.47957 * 86.18181 * 138.08146 * 4 2 1 6 6 C 1.46903 * 110.99836 * 222.42105 * 5 4 2 7 7 C 1.50711 * 109.46830 * 171.45848 * 6 5 4 8 8 H 1.08003 * 119.99905 * 3.96801 * 7 6 5 9 9 C 1.37875 * 119.99781 * 183.95905 * 7 6 5 10 10 N 1.31514 * 119.99995 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99942 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47377 * 90.00290 * 11 9 7 13 13 H 1.48500 * 109.47313 * 210.00086 * 11 9 7 14 14 H 1.48505 * 109.47182 * 330.00368 * 11 9 7 15 15 C 1.47969 * 90.76299 * 335.31072 * 5 4 2 16 16 C 1.52994 * 113.75782 * 270.37309 * 15 5 4 17 17 C 1.53005 * 113.75754 * 139.00712 * 15 5 4 18 18 H 1.08995 * 109.47395 * 307.86615 * 1 2 3 19 19 H 1.08999 * 109.47320 * 67.87142 * 1 2 3 20 20 H 1.09000 * 109.46970 * 187.86651 * 1 2 3 21 21 H 1.09003 * 109.46725 * 172.12981 * 3 2 1 22 22 H 1.08999 * 109.46908 * 292.13078 * 3 2 1 23 23 H 1.08995 * 109.46640 * 52.13280 * 3 2 1 24 24 H 1.08997 * 113.76068 * 252.40137 * 4 2 1 25 25 H 1.09003 * 113.75737 * 23.76137 * 4 2 1 26 26 H 1.08996 * 109.46677 * 291.45447 * 6 5 4 27 27 H 1.08998 * 109.47142 * 51.46206 * 6 5 4 28 28 H 0.96995 * 119.99828 * 179.97438 * 10 9 7 29 29 H 1.09003 * 109.47100 * 164.16421 * 16 15 5 30 30 H 1.09006 * 109.47372 * 284.16369 * 16 15 5 31 31 H 1.09006 * 109.47514 * 44.16556 * 16 15 5 32 32 H 1.08995 * 109.46854 * 323.43963 * 17 15 5 33 33 H 1.08994 * 109.46890 * 83.44244 * 17 15 5 34 34 H 1.08995 * 109.46632 * 203.44266 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1280 1.4083 0.0000 4 6 2.1496 -0.9362 1.0532 5 7 3.1155 -1.3197 0.0001 6 6 3.3459 -2.7705 0.0001 7 6 4.1638 -3.1492 -1.2078 8 1 4.5350 -2.3817 -1.8709 9 6 4.4383 -4.4754 -1.4662 10 7 3.9860 -5.4100 -0.6590 11 14 5.4526 -4.9448 -2.9629 12 1 6.8913 -4.9759 -2.5961 13 1 5.0352 -6.2867 -3.4429 14 1 5.2379 -3.9450 -4.0398 15 6 2.1495 -0.9362 -1.0532 16 6 1.2245 -2.0756 -1.4855 17 6 2.7854 -0.2003 -2.2344 18 1 -0.3634 0.6308 0.8112 19 1 -0.3634 0.3871 -0.9519 20 1 -0.3633 -1.0180 0.1407 21 1 3.2071 1.3448 0.1407 22 1 1.9137 1.8941 -0.9520 23 1 1.6894 1.9892 0.8113 24 1 2.6025 -0.4120 1.8947 25 1 1.4905 -1.7479 1.3612 26 1 3.8829 -3.0530 0.9055 27 1 2.3885 -3.2904 -0.0319 28 1 4.1789 -6.3430 -0.8410 29 1 0.3779 -1.6668 -2.0372 30 1 1.7741 -2.7675 -2.1238 31 1 0.8624 -2.6042 -0.6037 32 1 3.5809 0.4504 -1.8713 33 1 3.2003 -0.9260 -2.9338 34 1 2.0278 0.3990 -2.7393 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:23 Heat of formation + Delta-G solvation = 0.537721 kcal Electronic energy + Delta-G solvation = -13552.972538 eV Core-core repulsion = 11485.646460 eV Total energy + Delta-G solvation = -2067.326078 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.78337 -35.36856 -33.39799 -32.07844 -29.63499 -29.19261 -26.83493 -25.61322 -23.89816 -21.64088 -18.55044 -17.79365 -16.76351 -16.50479 -16.20710 -15.73949 -14.63819 -14.54592 -14.16957 -13.48946 -13.28176 -13.20355 -12.95025 -12.86237 -12.77481 -12.69765 -12.48846 -12.29472 -12.23581 -12.16995 -11.64124 -11.10363 -10.86305 -10.67641 -10.55797 -9.28388 -8.19277 -6.26554 1.37651 1.38744 1.49616 2.39399 3.13749 3.30382 3.48021 3.93585 4.30778 4.37352 4.40739 4.51179 4.73659 4.78498 4.84750 4.88438 4.91656 4.98515 5.05838 5.11970 5.14124 5.19434 5.24027 5.26037 5.34180 5.49805 5.53388 5.70198 5.76929 5.94413 6.28769 6.58521 6.88990 7.41441 8.92446 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.052334 B = 0.010949 C = 0.010406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.901340 B = 2556.597980 C = 2690.224752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 C -0.113 4.113 4 C -0.003 4.003 5 N -0.488 5.488 6 C 0.171 3.829 7 C -0.506 4.506 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.960 3.040 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.264 1.264 15 C 0.068 3.932 16 C -0.133 4.133 17 C -0.114 4.114 18 H 0.071 0.929 19 H 0.069 0.931 20 H 0.045 0.955 21 H 0.047 0.953 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.047 0.953 26 H -0.016 1.016 27 H -0.008 1.008 28 H 0.262 0.738 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 11.476 -1.261 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 C -0.170 4.170 4 C -0.132 4.132 5 N -0.211 5.211 6 C 0.043 3.957 7 C -0.545 4.545 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.576 5.576 11 Si 0.785 3.215 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.188 1.188 15 C -0.022 4.022 16 C -0.191 4.191 17 C -0.172 4.172 18 H 0.090 0.910 19 H 0.088 0.912 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.002 0.998 27 H 0.010 0.990 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.194 11.550 -1.236 13.164 hybrid contribution 0.054 -1.618 -0.313 1.648 sum -6.139 9.933 -1.548 11.779 Atomic orbital electron populations 1.21726 0.92770 1.01584 1.02810 1.22369 0.95940 0.95468 0.93751 1.21466 1.00252 0.92812 1.02511 1.23986 0.94754 0.98032 0.96430 1.68577 1.32116 1.16805 1.03576 1.19886 0.94801 0.85623 0.95353 1.21325 1.31977 0.91856 1.09328 0.92369 1.25835 0.97410 0.96538 0.99787 1.70086 1.47465 1.00661 1.39389 0.85515 0.78816 0.77562 0.79567 1.20172 1.20760 1.18837 1.22636 0.91517 0.94597 0.93459 1.21777 0.99053 0.97805 1.00467 1.21512 1.00427 0.99109 0.96126 0.90979 0.91155 0.93617 0.93342 0.91119 0.91129 0.89932 0.93469 0.99802 0.98998 0.92921 0.90526 0.93942 0.94478 0.92291 0.94775 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.23 71.98 0.59 -2.61 16 2 C -0.07 -2.25 1.31 -51.53 -0.07 -2.32 16 3 C -0.11 -2.85 7.90 71.98 0.57 -2.28 16 4 C 0.00 -0.11 6.74 86.41 0.58 0.47 16 5 N -0.49 -21.89 5.89 -862.07 -5.08 -26.97 16 6 C 0.17 9.37 4.22 85.56 0.36 9.73 16 7 C -0.51 -29.25 7.82 25.60 0.20 -29.05 16 8 H 0.06 3.34 7.01 -2.91 -0.02 3.32 16 9 C 0.00 0.11 5.46 84.65 0.46 0.57 16 10 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 11 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 15 C 0.07 2.56 0.91 3.63 0.00 2.56 16 16 C -0.13 -5.21 6.29 71.98 0.45 -4.76 16 17 C -0.11 -3.93 8.06 71.98 0.58 -3.35 16 18 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 19 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 20 H 0.04 1.21 6.83 -2.39 -0.02 1.20 16 21 H 0.05 1.40 7.72 -2.39 -0.02 1.38 16 22 H 0.07 1.55 7.57 -2.39 -0.02 1.53 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 25 H 0.05 1.83 7.26 -2.39 -0.02 1.81 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 27 H -0.01 -0.44 5.49 -2.39 -0.01 -0.46 16 28 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.08 2.42 7.80 -2.39 -0.02 2.40 16 30 H 0.04 1.95 7.04 -2.38 -0.02 1.94 16 31 H 0.04 1.53 5.64 -2.38 -0.01 1.52 16 32 H 0.06 2.00 7.26 -2.39 -0.02 1.99 16 33 H 0.03 1.31 7.60 -2.39 -0.02 1.29 16 34 H 0.08 2.12 8.06 -2.39 -0.02 2.10 16 Total: -1.00 -64.72 261.23 2.01 -62.70 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.05 Total: 5.02 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 3.74 Total: -31.03 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -4.80 Total: -84.06 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -64.72 2.01 -62.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.242 kcal (2) G-P(sol) polarization free energy of solvation -64.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds