Wall clock time and date at job start Mon Mar 30 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 112.78830 * 2 1 4 4 C 1.53516 * 113.47665 * 229.19467 * 2 1 3 5 5 C 1.53519 * 83.57413 * 271.25635 * 4 2 1 6 6 N 1.47476 * 113.47805 * 130.81059 * 2 1 3 7 7 C 1.46899 * 110.99917 * 336.06651 * 6 2 1 8 8 C 1.52997 * 109.47254 * 187.49642 * 7 6 2 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47592 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00356 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47114 * 60.00582 * 14 12 10 16 16 H 1.48503 * 109.47134 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47402 * 300.00322 * 14 12 10 18 18 H 1.08992 * 109.47522 * 289.18849 * 1 2 3 19 19 H 1.08997 * 109.47182 * 49.19270 * 1 2 3 20 20 H 1.09002 * 109.47107 * 169.18673 * 1 2 3 21 21 H 1.08993 * 109.47049 * 190.81009 * 3 2 1 22 22 H 1.08997 * 109.46845 * 310.81198 * 3 2 1 23 23 H 1.08998 * 109.46654 * 70.81103 * 3 2 1 24 24 H 1.09007 * 114.17104 * 157.61278 * 4 2 1 25 25 H 1.08997 * 114.34860 * 24.91604 * 4 2 1 26 26 H 1.08998 * 113.47699 * 219.21172 * 5 4 2 27 27 H 1.08990 * 113.47741 * 88.74148 * 5 4 2 28 28 H 1.09002 * 109.47043 * 307.49713 * 7 6 2 29 29 H 1.09001 * 109.47354 * 67.49774 * 7 6 2 30 30 H 1.09002 * 109.47153 * 300.00004 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99633 * 8 7 6 32 32 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 33 33 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 34 34 H 0.96996 * 119.99885 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1226 1.4106 0.0000 4 6 2.1415 -0.9202 -1.0658 5 6 2.0424 -1.9804 0.0401 6 7 2.1175 -0.8841 1.0238 7 6 1.1775 -1.1049 2.1308 8 6 1.8827 -1.8673 3.2543 9 6 0.9039 -2.0968 4.4076 10 6 1.5984 -2.8482 5.5140 11 1 2.6344 -3.1333 5.4056 12 6 0.9114 -3.1710 6.6650 13 7 -0.3501 -2.8235 6.7973 14 14 1.7721 -4.1031 8.0361 15 1 2.9317 -3.3119 8.5205 16 1 0.8220 -4.3257 9.1556 17 1 2.2465 -5.4130 7.5223 18 1 -0.3634 0.3377 0.9705 19 1 -0.3633 0.6716 -0.7778 20 1 -0.3633 -1.0094 -0.1928 21 1 3.1939 1.3546 -0.1927 22 1 1.6441 2.0057 -0.7778 23 1 1.9519 1.8763 0.9706 24 1 3.1628 -0.6616 -1.3460 25 1 1.4945 -1.1073 -1.9228 26 1 2.8988 -2.6537 0.0741 27 1 1.0892 -2.5088 0.0508 28 1 0.8278 -0.1438 2.5077 29 1 0.3272 -1.6868 1.7750 30 1 2.2324 -2.8284 2.8774 31 1 2.7330 -1.2855 3.6103 32 1 0.5546 -1.1355 4.7844 33 1 0.0534 -2.6785 4.0520 34 1 -0.8335 -3.0508 7.6069 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687714689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:37 Heat of formation + Delta-G solvation = 13.108826 kcal Electronic energy + Delta-G solvation = -12683.420265 eV Core-core repulsion = 10616.639311 eV Total energy + Delta-G solvation = -2066.780954 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.53488 -34.25029 -32.17854 -30.82891 -28.88620 -27.41477 -25.42567 -22.72131 -22.30754 -19.95148 -18.05201 -16.27830 -15.62525 -15.31286 -14.93596 -14.38761 -13.86755 -13.30030 -12.61030 -12.24805 -12.23305 -12.03890 -11.73068 -11.52169 -11.44216 -11.01913 -10.84197 -10.65739 -10.54690 -10.38955 -10.04039 -9.55624 -9.22834 -9.01450 -8.50132 -8.30113 -5.95687 -3.97546 3.36561 3.40202 3.43419 4.15992 4.49139 4.52804 4.83828 5.11614 5.31074 5.38166 5.39991 5.52231 5.63051 5.71557 5.79637 5.87209 5.93326 5.94702 5.95499 6.10490 6.14090 6.37106 6.43686 6.59991 6.88285 6.93764 7.23712 7.47455 7.73219 7.88873 8.05204 8.49194 9.09535 9.66136 11.15844 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.069347 B = 0.006512 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.667257 B = 4298.572303 C = 4415.769907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.044 3.956 3 C -0.124 4.124 4 C -0.140 4.140 5 C -0.002 4.002 6 N -0.463 5.463 7 C 0.022 3.978 8 C -0.099 4.099 9 C 0.022 3.978 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 H 0.068 0.932 19 H 0.061 0.939 20 H 0.058 0.942 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.014 0.986 33 H 0.013 0.987 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 5.019 -14.574 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.046 4.046 3 C -0.182 4.182 4 C -0.178 4.178 5 C -0.131 4.131 6 N -0.186 5.186 7 C -0.106 4.106 8 C -0.137 4.137 9 C -0.016 4.016 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 H 0.087 0.913 19 H 0.080 0.920 20 H 0.077 0.923 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.775 5.180 -14.077 15.254 hybrid contribution -0.505 -0.792 0.643 1.139 sum 2.270 4.387 -13.434 14.313 Atomic orbital electron populations 1.22071 0.94476 1.02170 1.02812 1.22668 0.93672 0.95152 0.93157 1.21584 1.00721 0.94340 1.01577 1.23309 1.01503 0.96779 0.96164 1.23730 1.01686 0.95234 0.92412 1.69052 1.40528 1.05715 1.03264 1.22803 0.94189 1.00404 0.93244 1.21522 0.99461 0.97981 0.94784 1.19075 0.94064 0.96694 0.91731 1.21237 0.97567 1.35766 1.01081 0.92743 1.25030 0.94886 0.96132 0.98473 1.69960 1.08981 1.47185 1.27622 0.86654 0.79340 0.80413 0.81573 1.20222 1.21305 1.20269 0.91324 0.92020 0.92300 0.92136 0.92698 0.92432 0.89278 0.91198 0.90102 0.91490 0.91511 0.94140 0.93686 0.92862 0.96727 0.96911 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 7.75 37.15 0.29 -1.62 16 2 C 0.04 0.57 1.34 -135.32 -0.18 0.39 16 3 C -0.12 -1.47 9.46 37.16 0.35 -1.12 16 4 C -0.14 -1.60 7.56 -26.19 -0.20 -1.80 16 5 C 0.00 -0.02 7.36 -7.53 -0.06 -0.08 16 6 N -0.46 -7.45 6.12 -228.61 -1.40 -8.85 16 7 C 0.02 0.40 3.72 -3.83 -0.01 0.38 16 8 C -0.10 -2.21 5.47 -26.74 -0.15 -2.35 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 11 H 0.05 1.56 7.74 -52.48 -0.41 1.16 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 14 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H 0.07 0.91 6.71 -51.93 -0.35 0.56 16 19 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 20 H 0.06 0.71 6.79 -51.93 -0.35 0.36 16 21 H 0.06 0.70 7.97 -51.93 -0.41 0.29 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 0.97 8.00 -51.93 -0.42 0.55 16 25 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 26 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.07 0.92 6.67 -51.93 -0.35 0.58 16 28 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 29 H 0.04 0.73 6.42 -51.93 -0.33 0.40 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 271.65 15.07 4.09 4.09 Total: -1.00 -30.74 271.65 -8.03 -38.77 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -5.93 Total: -4.53 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -0.51 Total: -19.76 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.66 Total: -35.75 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.74 -8.03 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.879 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds