Wall clock time and date at job start Mon Mar 30 2020 01:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 112.78830 * 2 1 4 4 C 1.53516 * 113.47665 * 229.19467 * 2 1 3 5 5 C 1.53519 * 83.57413 * 271.25635 * 4 2 1 6 6 N 1.47476 * 113.47805 * 130.81059 * 2 1 3 7 7 C 1.46899 * 110.99917 * 336.06651 * 6 2 1 8 8 C 1.52997 * 109.47254 * 187.49642 * 7 6 2 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47592 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00356 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47114 * 60.00582 * 14 12 10 16 16 H 1.48503 * 109.47134 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47402 * 300.00322 * 14 12 10 18 18 H 1.08992 * 109.47522 * 289.18849 * 1 2 3 19 19 H 1.08997 * 109.47182 * 49.19270 * 1 2 3 20 20 H 1.09002 * 109.47107 * 169.18673 * 1 2 3 21 21 H 1.08993 * 109.47049 * 190.81009 * 3 2 1 22 22 H 1.08997 * 109.46845 * 310.81198 * 3 2 1 23 23 H 1.08998 * 109.46654 * 70.81103 * 3 2 1 24 24 H 1.09007 * 114.17104 * 157.61278 * 4 2 1 25 25 H 1.08997 * 114.34860 * 24.91604 * 4 2 1 26 26 H 1.08998 * 113.47699 * 219.21172 * 5 4 2 27 27 H 1.08990 * 113.47741 * 88.74148 * 5 4 2 28 28 H 1.09002 * 109.47043 * 307.49713 * 7 6 2 29 29 H 1.09001 * 109.47354 * 67.49774 * 7 6 2 30 30 H 1.09002 * 109.47153 * 300.00004 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99633 * 8 7 6 32 32 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 33 33 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 34 34 H 0.96996 * 119.99885 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1226 1.4106 0.0000 4 6 2.1415 -0.9202 -1.0658 5 6 2.0424 -1.9804 0.0401 6 7 2.1175 -0.8841 1.0238 7 6 1.1775 -1.1049 2.1308 8 6 1.8827 -1.8673 3.2543 9 6 0.9039 -2.0968 4.4076 10 6 1.5984 -2.8482 5.5140 11 1 2.6344 -3.1333 5.4056 12 6 0.9114 -3.1710 6.6650 13 7 -0.3501 -2.8235 6.7973 14 14 1.7721 -4.1031 8.0361 15 1 2.9317 -3.3119 8.5205 16 1 0.8220 -4.3257 9.1556 17 1 2.2465 -5.4130 7.5223 18 1 -0.3634 0.3377 0.9705 19 1 -0.3633 0.6716 -0.7778 20 1 -0.3633 -1.0094 -0.1928 21 1 3.1939 1.3546 -0.1927 22 1 1.6441 2.0057 -0.7778 23 1 1.9519 1.8763 0.9706 24 1 3.1628 -0.6616 -1.3460 25 1 1.4945 -1.1073 -1.9228 26 1 2.8988 -2.6537 0.0741 27 1 1.0892 -2.5088 0.0508 28 1 0.8278 -0.1438 2.5077 29 1 0.3272 -1.6868 1.7750 30 1 2.2324 -2.8284 2.8774 31 1 2.7330 -1.2855 3.6103 32 1 0.5546 -1.1355 4.7844 33 1 0.0534 -2.6785 4.0520 34 1 -0.8335 -3.0508 7.6069 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687714689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:36 Heat of formation + Delta-G solvation = -7.185292 kcal Electronic energy + Delta-G solvation = -12684.300284 eV Core-core repulsion = 10616.639311 eV Total energy + Delta-G solvation = -2067.660973 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.65350 -36.21390 -34.12784 -31.97207 -30.48379 -28.38312 -27.27509 -24.15611 -23.71690 -21.79429 -19.16115 -18.44507 -16.88607 -16.64950 -16.35416 -16.09129 -15.41941 -14.44908 -14.26848 -13.94631 -13.59288 -13.23882 -13.18305 -12.82600 -12.65707 -12.57043 -12.37779 -12.22782 -12.21266 -11.92404 -11.51116 -11.35897 -11.02610 -10.96213 -10.57387 -9.72773 -8.22291 -6.34029 1.38156 1.41932 1.50018 2.39484 3.03667 3.10262 3.50410 3.82471 4.03555 4.16180 4.25730 4.38736 4.41152 4.63721 4.70189 4.74017 4.78477 4.83953 4.92160 4.97997 5.01265 5.09781 5.15966 5.19268 5.25538 5.45362 5.49361 5.58977 5.74667 5.82322 6.16661 6.27883 6.81995 7.35229 8.89575 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.069347 B = 0.006512 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.667257 B = 4298.572303 C = 4415.769907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.038 3.962 3 C -0.123 4.123 4 C -0.120 4.120 5 C -0.010 4.010 6 N -0.484 5.484 7 C 0.037 3.963 8 C -0.085 4.085 9 C 0.027 3.973 10 C -0.547 4.547 11 H 0.057 0.943 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.266 1.266 18 H 0.050 0.950 19 H 0.086 0.914 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.045 0.955 32 H -0.010 1.010 33 H -0.009 1.009 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 4.902 -15.606 16.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.052 4.052 3 C -0.181 4.181 4 C -0.157 4.157 5 C -0.139 4.139 6 N -0.207 5.207 7 C -0.091 4.091 8 C -0.123 4.123 9 C -0.010 4.010 10 C -0.585 4.585 11 H 0.075 0.925 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.191 1.191 18 H 0.069 0.931 19 H 0.105 0.895 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.098 0.902 23 H 0.060 0.940 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.599 5.069 -15.128 16.356 hybrid contribution -0.779 -0.732 0.932 1.418 sum 2.819 4.337 -14.196 15.109 Atomic orbital electron populations 1.22060 0.93894 1.02675 1.02722 1.22861 0.94266 0.95626 0.92432 1.21599 1.01062 0.93802 1.01604 1.23252 1.02425 0.94240 0.95807 1.23837 1.01684 0.95451 0.92913 1.69023 1.40204 1.07797 1.03671 1.22496 0.94184 0.99247 0.93210 1.21275 0.98134 0.98377 0.94506 1.18962 0.94269 0.94718 0.93070 1.21664 0.97995 1.36547 1.02311 0.92483 1.26011 0.95605 0.96911 1.01284 1.70091 1.10588 1.48092 1.28607 0.85470 0.78321 0.79140 0.77942 1.19186 1.20478 1.19111 0.93105 0.89513 0.92438 0.91961 0.90240 0.93989 0.88304 0.88788 0.90166 0.91551 0.92269 0.94165 0.93802 0.93630 0.99149 0.99088 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 7.75 71.98 0.56 -2.96 16 2 C 0.04 0.92 1.34 0.81 0.00 0.92 16 3 C -0.12 -2.66 9.46 71.98 0.68 -1.98 16 4 C -0.12 -2.39 7.56 30.94 0.23 -2.16 16 5 C -0.01 -0.26 7.36 83.58 0.62 0.35 16 6 N -0.48 -15.19 6.12 -877.19 -5.37 -20.56 16 7 C 0.04 1.39 3.72 86.30 0.32 1.71 16 8 C -0.08 -3.85 5.47 30.59 0.17 -3.68 16 9 C 0.03 1.53 4.97 29.84 0.15 1.68 16 10 C -0.55 -32.75 9.11 25.60 0.23 -32.51 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 12 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 13 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 14 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 H 0.05 1.32 6.71 -2.39 -0.02 1.31 16 19 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 20 H 0.06 1.30 6.79 -2.39 -0.02 1.29 16 21 H 0.06 1.31 7.97 -2.39 -0.02 1.29 16 22 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.10 1.82 8.00 -2.38 -0.02 1.80 16 25 H 0.09 1.48 8.11 -2.39 -0.02 1.46 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 1.75 6.67 -2.39 -0.02 1.73 16 28 H 0.06 2.27 7.31 -2.39 -0.02 2.25 16 29 H 0.04 1.48 6.42 -2.39 -0.02 1.47 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 2.10 8.14 -2.39 -0.02 2.09 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 34 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -66.08 271.65 1.40 -64.68 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.03 Total: 4.62 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.42 Total: -38.19 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -5.09 Total: -78.62 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -66.08 1.40 -64.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.499 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds