Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46694 * 2 1 4 4 C 1.53002 * 109.47070 * 299.99384 * 3 2 1 5 5 N 1.46901 * 109.47186 * 179.97438 * 3 2 1 6 6 C 1.46908 * 110.99915 * 299.03966 * 5 3 2 7 7 C 1.50696 * 109.46932 * 185.17562 * 6 5 3 8 8 H 1.07993 * 120.00519 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99618 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00079 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99952 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47011 * 89.99731 * 11 9 7 13 13 H 1.48496 * 109.46859 * 209.99843 * 11 9 7 14 14 H 1.48504 * 109.46729 * 329.99754 * 11 9 7 15 15 C 1.52999 * 109.47537 * 59.99540 * 3 2 1 16 16 C 1.52993 * 117.50038 * 252.11041 * 15 3 2 17 17 C 1.53001 * 117.50136 * 183.48473 * 15 3 2 18 18 H 1.08997 * 109.46505 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47422 * 300.00430 * 1 2 3 20 20 H 1.09000 * 109.46950 * 60.00431 * 1 2 3 21 21 H 1.08993 * 109.47823 * 239.99855 * 2 1 3 22 22 H 1.08996 * 109.47210 * 119.99157 * 2 1 3 23 23 H 1.08998 * 109.47055 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.46637 * 60.00475 * 4 3 2 25 25 H 1.08999 * 109.47495 * 300.00823 * 4 3 2 26 26 H 1.00901 * 111.00677 * 175.08500 * 5 3 2 27 27 H 1.09001 * 109.46656 * 305.17418 * 6 5 3 28 28 H 1.09000 * 109.46936 * 65.17124 * 6 5 3 29 29 H 0.97000 * 119.99892 * 180.02562 * 10 9 7 30 30 H 1.09003 * 115.54706 * 37.82078 * 15 3 2 31 31 H 1.08996 * 117.50146 * 0.02562 * 16 15 3 32 32 H 1.09006 * 117.49679 * 145.02032 * 16 15 3 33 33 H 1.08998 * 117.50447 * 214.97943 * 17 15 3 34 34 H 1.08999 * 117.49617 * 0.02562 * 17 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5300 2.1637 -1.2493 5 7 3.5089 1.4427 0.0006 6 6 4.0349 0.7772 1.2000 7 6 5.5359 0.9079 1.2295 8 1 6.0480 1.4324 0.4365 9 6 6.2556 0.3568 2.2685 10 7 5.6320 -0.2824 3.2340 11 14 8.1162 0.5194 2.3055 12 1 8.4903 1.7592 3.0322 13 1 8.7020 -0.6563 2.9980 14 1 8.6350 0.5846 0.9156 15 6 1.5298 2.1639 1.2491 16 6 0.4364 3.2170 1.0597 17 6 1.8655 3.6496 1.3936 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8935 -0.5138 -0.8899 22 1 1.8933 -0.5137 0.8900 23 1 1.8929 3.1915 -1.2491 24 1 0.4399 2.1637 -1.2493 25 1 1.8933 1.6498 -2.1393 26 1 3.8706 2.3812 -0.0801 27 1 3.6120 1.2441 2.0895 28 1 3.7623 -0.2780 1.1791 29 1 6.1383 -0.6697 3.9651 30 1 1.4993 1.5641 2.1588 31 1 0.0800 3.3958 0.0453 32 1 -0.3141 3.3102 1.8449 33 1 2.0553 4.0274 2.3982 34 1 2.4493 4.1133 0.5985 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691515623.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = 11.706854 kcal Electronic energy + Delta-G solvation = -13154.504604 eV Core-core repulsion = 11087.662856 eV Total energy + Delta-G solvation = -2066.841748 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.05011 -34.44549 -33.03040 -31.41923 -28.73358 -25.99794 -24.05335 -22.06414 -21.96560 -21.52596 -17.60300 -16.50002 -15.66819 -14.82954 -14.50943 -14.41973 -13.67802 -13.21399 -12.28660 -12.12044 -11.90426 -11.71781 -11.62057 -11.17814 -11.14200 -10.86253 -10.72232 -10.61249 -10.54828 -10.12599 -9.79203 -9.59325 -9.46337 -9.05218 -8.43360 -7.16942 -5.98862 -3.99694 3.33591 3.39653 3.44263 4.22481 4.46958 5.05407 5.14894 5.30288 5.37016 5.42763 5.55925 5.56769 5.74192 5.83613 5.87734 6.00577 6.14495 6.20786 6.26851 6.41771 6.43981 6.50525 6.54622 6.64168 6.82480 6.92629 7.40721 7.59517 7.83980 8.20663 8.48933 8.72544 9.10513 9.64544 11.12236 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045721 B = 0.009295 C = 0.008866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.267485 B = 3011.545039 C = 3157.452577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C 0.142 3.858 4 C -0.141 4.141 5 N -0.677 5.677 6 C 0.193 3.807 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.161 4.161 16 C -0.189 4.189 17 C -0.177 4.177 18 H 0.046 0.954 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.327 0.673 27 H -0.007 1.007 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.601 4.462 -4.976 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C 0.050 3.950 4 C -0.198 4.198 5 N -0.306 5.306 6 C 0.066 3.934 7 C -0.553 4.553 8 H 0.078 0.922 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.181 4.181 16 C -0.227 4.227 17 C -0.214 4.214 18 H 0.065 0.935 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.011 0.989 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.487 3.777 -5.214 11.465 hybrid contribution 0.896 0.718 1.018 1.535 sum -8.591 4.495 -4.196 10.565 Atomic orbital electron populations 1.21828 0.96638 1.00656 1.01499 1.21496 0.94318 0.95863 1.02808 1.20432 0.89811 0.93941 0.90846 1.21991 1.00086 0.99776 0.97990 1.60950 1.02963 1.22656 1.44055 1.19560 0.94183 0.94369 0.85242 1.21245 0.91957 1.34949 1.07115 0.92246 1.24964 0.98593 0.95388 0.95566 1.69962 1.35526 1.36867 1.11382 0.86537 0.85555 0.77434 0.78113 1.20822 1.21284 1.19827 1.23111 1.01987 0.91308 1.01665 1.23072 0.91900 1.05532 1.02149 1.22813 0.97983 0.98324 1.02259 0.93499 0.92771 0.93046 0.91738 0.91378 0.93317 0.92356 0.92267 0.85575 0.98908 0.95327 0.93039 0.88236 0.88646 0.89906 0.89429 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.32 37.16 0.35 -1.72 16 2 C -0.11 -1.86 4.78 -26.73 -0.13 -1.99 16 3 C 0.14 2.50 0.58 -131.60 -0.08 2.42 16 4 C -0.14 -2.07 7.01 37.16 0.26 -1.81 16 5 N -0.68 -14.62 6.11 -101.21 -0.62 -15.24 16 6 C 0.19 5.05 4.73 -4.97 -0.02 5.03 16 7 C -0.51 -14.72 9.26 -34.44 -0.32 -15.04 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 11 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.16 -2.75 2.66 -90.62 -0.24 -2.99 16 16 C -0.19 -2.63 9.45 -26.73 -0.25 -2.88 16 17 C -0.18 -2.80 9.55 -26.73 -0.26 -3.05 16 18 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 19 H 0.05 0.75 7.06 -51.93 -0.37 0.38 16 20 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 21 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 22 H 0.07 1.35 6.54 -51.93 -0.34 1.01 16 23 H 0.05 0.69 7.00 -51.93 -0.36 0.33 16 24 H 0.06 0.75 5.10 -51.93 -0.26 0.49 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.33 6.93 8.14 -39.29 -0.32 6.61 16 27 H -0.01 -0.19 6.63 -51.93 -0.34 -0.53 16 28 H 0.03 0.81 6.61 -51.93 -0.34 0.47 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.10 1.91 7.74 -51.93 -0.40 1.51 16 31 H 0.10 1.21 5.88 -51.93 -0.31 0.91 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.09 1.40 7.20 -51.93 -0.37 1.02 16 LS Contribution 264.20 15.07 3.98 3.98 Total: -1.00 -29.41 264.20 -7.12 -36.53 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.41 Total: 4.60 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -0.79 Total: -20.51 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.12 Total: -41.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.41 -7.12 -36.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691515623.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.239 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds