Wall clock time and date at job start Mon Mar 30 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47467 * 2 1 4 4 C 1.52997 * 109.46934 * 59.99538 * 3 2 1 5 5 N 1.46892 * 109.47347 * 179.97438 * 3 2 1 6 6 C 1.46906 * 111.00146 * 295.30137 * 5 3 2 7 7 C 1.50698 * 109.47333 * 183.65330 * 6 5 3 8 8 H 1.08001 * 119.99634 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00031 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00274 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00134 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47084 * 90.00144 * 11 9 7 13 13 H 1.48496 * 109.47064 * 210.00198 * 11 9 7 14 14 H 1.48499 * 109.46780 * 330.00037 * 11 9 7 15 15 C 1.52998 * 109.46940 * 299.99993 * 3 2 1 16 16 C 1.52999 * 117.49979 * 254.41707 * 15 3 2 17 17 C 1.52996 * 117.49708 * 185.75344 * 15 3 2 18 18 H 1.08997 * 109.47675 * 300.00069 * 1 2 3 19 19 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 20 20 H 1.09008 * 109.46967 * 59.99854 * 1 2 3 21 21 H 1.09003 * 109.47333 * 119.99840 * 2 1 3 22 22 H 1.09006 * 109.47210 * 240.00211 * 2 1 3 23 23 H 1.09008 * 109.46797 * 60.00284 * 4 3 2 24 24 H 1.08997 * 109.47366 * 179.97438 * 4 3 2 25 25 H 1.09003 * 109.47426 * 300.00599 * 4 3 2 26 26 H 1.00894 * 111.00364 * 59.25519 * 5 3 2 27 27 H 1.08995 * 109.47121 * 303.65843 * 6 5 3 28 28 H 1.08999 * 109.46941 * 63.65393 * 6 5 3 29 29 H 0.97003 * 120.00514 * 179.97438 * 10 9 7 30 30 H 1.09004 * 115.55197 * 40.08924 * 15 3 2 31 31 H 1.08997 * 117.49692 * 359.97438 * 16 15 3 32 32 H 1.09002 * 117.49831 * 145.02386 * 16 15 3 33 33 H 1.09006 * 117.50256 * 214.97923 * 17 15 3 34 34 H 1.08996 * 117.50099 * 0.02562 * 17 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 7 3.5090 1.4425 0.0006 6 6 4.0349 0.8565 1.2408 7 6 5.5387 0.9551 1.2448 8 1 6.0523 1.4081 0.4096 9 6 6.2587 0.4669 2.3144 10 7 5.6333 -0.0852 3.3310 11 14 8.1227 0.5897 2.3196 12 1 8.5326 1.8714 2.9476 13 1 8.6913 -0.5441 3.0918 14 1 8.6259 0.5394 0.9233 15 6 1.5301 2.1637 -1.2492 16 6 2.5338 2.4231 -2.3745 17 6 2.0423 3.5827 -1.5043 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 1.8933 -0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 1.6499 2.1392 24 1 1.8937 3.1913 1.2495 25 1 0.4399 2.1637 1.2492 26 1 3.8709 0.9608 -0.8087 27 1 3.6331 1.3977 2.0973 28 1 3.7393 -0.1909 1.3017 29 1 6.1399 -0.4290 4.0835 30 1 0.5016 1.9413 -1.5337 31 1 3.5575 2.0803 -2.2245 32 1 2.1656 2.3717 -3.3991 33 1 1.3510 4.2936 -1.9569 34 1 2.7429 4.0022 -0.7824 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691515627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:56 Heat of formation + Delta-G solvation = 15.509671 kcal Electronic energy + Delta-G solvation = -13102.740413 eV Core-core repulsion = 11036.063567 eV Total energy + Delta-G solvation = -2066.676846 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.84595 -34.70962 -33.00915 -31.37483 -28.35976 -26.39431 -23.89301 -22.38211 -21.83083 -21.25139 -17.73042 -16.56784 -15.55561 -15.01954 -14.42136 -14.29015 -13.43144 -13.07341 -12.51241 -12.29396 -11.91338 -11.70366 -11.63098 -11.15820 -11.00216 -10.90946 -10.71902 -10.50165 -10.28307 -10.14314 -9.79868 -9.58420 -9.46795 -9.07519 -8.41606 -7.16912 -5.99366 -4.00256 3.33867 3.39608 3.43414 4.26507 4.45937 5.09048 5.19980 5.33620 5.36604 5.42808 5.56333 5.58324 5.74964 5.78759 6.05769 6.11061 6.17968 6.19881 6.32230 6.41872 6.50929 6.52974 6.70366 6.71905 6.85970 6.92919 7.38423 7.50862 7.84498 8.20036 8.49163 8.69028 9.09154 9.64079 11.11456 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042205 B = 0.009550 C = 0.008495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.268994 B = 2931.255425 C = 3295.312824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.142 3.858 4 C -0.135 4.135 5 N -0.679 5.679 6 C 0.189 3.811 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 C -0.144 4.144 16 C -0.179 4.179 17 C -0.168 4.168 18 H 0.055 0.945 19 H 0.044 0.956 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.327 0.673 27 H 0.034 0.966 28 H -0.012 1.012 29 H 0.260 0.740 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.693 2.627 -7.334 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.050 3.950 4 C -0.193 4.193 5 N -0.309 5.309 6 C 0.063 3.937 7 C -0.549 4.549 8 H 0.078 0.922 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.162 4.162 16 C -0.216 4.216 17 C -0.205 4.205 18 H 0.074 0.926 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.145 0.855 27 H 0.052 0.948 28 H 0.006 0.994 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.586 3.196 -6.918 11.480 hybrid contribution 0.826 -0.999 -0.031 1.297 sum -7.760 2.197 -6.948 10.645 Atomic orbital electron populations 1.21843 0.96537 1.00694 1.01511 1.22238 0.95673 0.98822 1.02142 1.20309 0.89775 0.91963 0.92930 1.21879 0.99058 1.00907 0.97418 1.60906 1.03246 1.60064 1.06701 1.19643 0.94600 0.92377 0.87071 1.21212 0.91536 1.37940 1.04234 0.92166 1.24972 0.98646 0.95419 0.95576 1.69959 1.35493 1.40334 1.08057 0.86520 0.85512 0.77500 0.77983 1.20705 1.21380 1.19924 1.22412 0.97759 0.98910 0.97122 1.22909 1.00588 1.03853 0.94256 1.22803 1.03546 0.90787 1.03403 0.92568 0.93665 0.92974 0.91209 0.92698 0.91882 0.92417 0.93372 0.85515 0.94805 0.99381 0.93028 0.88457 0.87694 0.90284 0.90311 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.30 37.15 0.35 -1.69 16 2 C -0.15 -2.53 4.84 -26.73 -0.13 -2.66 16 3 C 0.14 2.51 0.55 -131.61 -0.07 2.44 16 4 C -0.14 -2.40 7.63 37.16 0.28 -2.11 16 5 N -0.68 -14.35 5.16 -101.22 -0.52 -14.87 16 6 C 0.19 4.90 4.65 -4.97 -0.02 4.88 16 7 C -0.51 -14.52 9.35 -34.44 -0.32 -14.84 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 11 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C -0.14 -2.18 4.84 -90.62 -0.44 -2.61 16 16 C -0.18 -2.63 9.75 -26.69 -0.26 -2.89 16 17 C -0.17 -2.49 9.66 -26.69 -0.26 -2.74 16 18 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.65 6.20 -51.92 -0.32 0.33 16 21 H 0.07 1.35 6.59 -51.93 -0.34 1.01 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.06 1.25 6.26 -51.92 -0.32 0.93 16 24 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 25 H 0.05 0.73 6.43 -51.93 -0.33 0.39 16 26 H 0.33 6.77 7.09 -39.29 -0.28 6.50 16 27 H 0.03 0.94 6.01 -51.93 -0.31 0.63 16 28 H -0.01 -0.32 6.61 -51.93 -0.34 -0.66 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.10 1.34 6.16 -51.93 -0.32 1.02 16 31 H 0.10 1.70 6.22 -51.93 -0.32 1.38 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.70 7.98 -51.93 -0.41 1.28 16 LS Contribution 263.69 15.07 3.97 3.97 Total: -1.00 -29.01 263.69 -7.09 -36.10 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.28 Total: 4.85 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: -0.97 Total: -20.74 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.21 Total: -41.08 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.01 -7.09 -36.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691515627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.605 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds