Wall clock time and date at job start Mon Mar 30 2020 01:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.52996 * 113.74430 * 139.93933 * 4 3 2 6 6 N 1.46901 * 109.47058 * 87.40318 * 5 4 3 7 7 C 1.46897 * 111.00222 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47363 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46930 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00627 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99300 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99246 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00275 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47312 * 89.99971 * 13 11 9 15 15 H 1.48502 * 109.47047 * 209.99937 * 13 11 9 16 16 H 1.48500 * 109.47206 * 329.99841 * 13 11 9 17 17 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 18 18 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 19 19 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 20 20 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 21 21 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 22 22 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 23 23 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 24 24 H 1.09000 * 113.53827 * 270.81220 * 4 3 2 25 25 H 1.09001 * 109.47389 * 207.40324 * 5 4 3 26 26 H 1.08999 * 109.47108 * 327.40791 * 5 4 3 27 27 H 1.00905 * 110.99985 * 56.04597 * 6 5 4 28 28 H 1.08994 * 109.47582 * 300.00779 * 7 6 5 29 29 H 1.09005 * 109.46976 * 60.00489 * 7 6 5 30 30 H 1.08999 * 109.46825 * 300.00298 * 8 7 6 31 31 H 1.08999 * 109.46673 * 59.99800 * 8 7 6 32 32 H 0.96999 * 119.99741 * 180.02562 * 12 11 9 33 33 H 1.09006 * 113.61506 * 254.52982 * 17 2 1 34 34 H 1.08994 * 113.61678 * 25.34974 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 3.5476 1.8422 -2.1109 6 7 4.6341 2.7248 -1.6651 7 6 5.0030 3.6792 -2.7191 8 6 6.1353 4.5788 -2.2191 9 6 6.5132 5.5582 -3.3002 10 1 5.9979 5.5407 -4.2491 11 6 7.5172 6.4769 -3.0777 12 7 7.8474 7.3313 -4.0214 13 14 8.4091 6.5067 -1.4368 14 1 9.5874 5.6051 -1.4973 15 1 8.8595 7.8910 -1.1433 16 1 7.4893 6.0478 -0.3650 17 6 2.1460 -0.1865 -1.3966 18 1 -0.3633 -0.9603 -0.3660 19 1 -0.3633 0.7971 -0.6487 20 1 -0.3634 0.1632 1.0147 21 1 1.9533 -0.6616 0.7559 22 1 1.4945 2.1704 -0.4289 23 1 2.5650 1.7024 0.9626 24 1 4.0711 0.4399 -0.5035 25 1 3.8700 1.2849 -2.9904 26 1 2.6723 2.4416 -2.3611 27 1 5.4353 2.1893 -1.3661 28 1 5.3355 3.1344 -3.6026 29 1 4.1379 4.2914 -2.9740 30 1 5.8031 5.1237 -1.3355 31 1 7.0002 3.9663 -1.9645 32 1 8.5538 7.9773 -3.8651 33 1 2.5651 -1.1795 -1.5599 34 1 1.4941 0.1364 -2.2081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691911913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:36 Heat of formation + Delta-G solvation = -4.243011 kcal Electronic energy + Delta-G solvation = -12191.261460 eV Core-core repulsion = 10123.728073 eV Total energy + Delta-G solvation = -2067.533386 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.27889 -35.72503 -32.87532 -30.91470 -29.20281 -25.85681 -25.62007 -23.21352 -20.95824 -20.22327 -19.31274 -16.73268 -15.71791 -15.36843 -14.36057 -14.31488 -13.77922 -13.63085 -13.06593 -12.90574 -12.51146 -12.41625 -12.19525 -11.44244 -11.35321 -11.02698 -10.89718 -10.59674 -10.30385 -10.16755 -9.97865 -9.79904 -9.54238 -9.20032 -8.51307 -7.85837 -6.02228 -4.00374 3.34020 3.41340 3.47948 4.42400 4.48661 4.58856 4.65913 4.76300 5.13741 5.29648 5.32468 5.40869 5.55316 5.61592 5.67813 5.76960 5.77938 5.86368 5.93592 6.09914 6.12698 6.24969 6.31924 6.38093 6.57321 6.81035 7.17909 7.41422 7.66670 7.80350 7.95838 8.55911 9.01999 9.60340 11.11217 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.076885 B = 0.005540 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.092706 B = 5052.896113 C = 5214.918800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.121 4.121 4 C -0.107 4.107 5 C 0.069 3.931 6 N -0.694 5.694 7 C 0.073 3.927 8 C -0.010 4.010 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.066 3.934 12 N -0.905 5.905 13 Si 0.882 3.118 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.263 1.263 17 C -0.133 4.133 18 H 0.052 0.948 19 H 0.055 0.945 20 H 0.052 0.948 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.333 0.667 28 H 0.020 0.980 29 H 0.063 0.937 30 H 0.025 0.975 31 H 0.008 0.992 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -14.614 7.641 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.158 4.158 4 C -0.125 4.125 5 C -0.061 4.061 6 N -0.324 5.324 7 C -0.055 4.055 8 C -0.048 4.048 9 C -0.560 4.560 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.544 5.544 13 Si 0.709 3.291 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.188 1.188 17 C -0.171 4.171 18 H 0.071 0.929 19 H 0.074 0.926 20 H 0.071 0.929 21 H 0.103 0.897 22 H 0.099 0.901 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.522 -14.011 7.907 19.788 hybrid contribution 1.087 -0.444 0.088 1.177 sum -10.435 -14.455 7.995 19.538 Atomic orbital electron populations 1.21718 0.95162 1.01461 1.01512 1.22494 0.95314 0.98385 0.97645 1.23004 0.97509 0.95618 0.99677 1.22518 0.97013 0.96011 0.96982 1.21923 0.95754 0.93503 0.94919 1.60599 1.11690 1.19828 1.40292 1.21951 0.99235 0.93375 0.90981 1.19549 0.92849 0.94808 0.97577 1.21091 1.19009 1.15196 1.00674 0.91150 1.25014 0.96657 0.95078 0.96710 1.69920 1.30917 1.20237 1.33310 0.86737 0.80203 0.77121 0.85024 1.20402 1.21427 1.18752 1.23026 0.98184 0.98850 0.97015 0.92909 0.92599 0.92870 0.89727 0.90112 0.91648 0.89544 0.95853 0.91342 0.84992 0.96168 0.91843 0.95671 0.97338 0.92749 0.91926 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.70 37.16 0.36 -0.84 16 2 C -0.12 -1.15 4.35 -89.81 -0.39 -1.54 16 3 C -0.12 -1.37 7.20 -25.83 -0.19 -1.56 16 4 C -0.11 -1.27 3.90 -89.71 -0.35 -1.62 16 5 C 0.07 0.99 5.53 -3.83 -0.02 0.97 16 6 N -0.69 -12.10 6.50 -113.78 -0.74 -12.84 16 7 C 0.07 1.52 5.62 -3.82 -0.02 1.50 16 8 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 9 C -0.52 -15.25 9.66 -34.44 -0.33 -15.59 16 10 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -28.38 13.96 55.43 0.77 -27.60 16 13 Si 0.88 22.21 27.47 -169.99 -4.67 17.55 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 17 C -0.13 -1.33 7.20 -25.92 -0.19 -1.52 16 18 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 19 H 0.05 0.48 7.98 -51.93 -0.41 0.07 16 20 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 27 H 0.33 5.48 8.72 -39.29 -0.34 5.14 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 31 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 LS Contribution 276.33 15.07 4.16 4.16 Total: -1.00 -30.52 276.33 -7.96 -38.48 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.14 Total: -1.07 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.35 Total: -18.68 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.03 Total: -40.44 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.52 -7.96 -38.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691911913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.237 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds