Wall clock time and date at job start Mon Mar 30 2020 01:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.52996 * 113.74430 * 139.93933 * 4 3 2 6 6 N 1.46901 * 109.47058 * 87.40318 * 5 4 3 7 7 C 1.46897 * 111.00222 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47363 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.46930 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00627 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99300 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99246 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00275 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47312 * 89.99971 * 13 11 9 15 15 H 1.48502 * 109.47047 * 209.99937 * 13 11 9 16 16 H 1.48500 * 109.47206 * 329.99841 * 13 11 9 17 17 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 18 18 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 19 19 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 20 20 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 21 21 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 22 22 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 23 23 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 24 24 H 1.09000 * 113.53827 * 270.81220 * 4 3 2 25 25 H 1.09001 * 109.47389 * 207.40324 * 5 4 3 26 26 H 1.08999 * 109.47108 * 327.40791 * 5 4 3 27 27 H 1.00905 * 110.99985 * 56.04597 * 6 5 4 28 28 H 1.08994 * 109.47582 * 300.00779 * 7 6 5 29 29 H 1.09005 * 109.46976 * 60.00489 * 7 6 5 30 30 H 1.08999 * 109.46825 * 300.00298 * 8 7 6 31 31 H 1.08999 * 109.46673 * 59.99800 * 8 7 6 32 32 H 0.96999 * 119.99741 * 180.02562 * 12 11 9 33 33 H 1.09006 * 113.61506 * 254.52982 * 17 2 1 34 34 H 1.08994 * 113.61678 * 25.34974 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 3.5476 1.8422 -2.1109 6 7 4.6341 2.7248 -1.6651 7 6 5.0030 3.6792 -2.7191 8 6 6.1353 4.5788 -2.2191 9 6 6.5132 5.5582 -3.3002 10 1 5.9979 5.5407 -4.2491 11 6 7.5172 6.4769 -3.0777 12 7 7.8474 7.3313 -4.0214 13 14 8.4091 6.5067 -1.4368 14 1 9.5874 5.6051 -1.4973 15 1 8.8595 7.8910 -1.1433 16 1 7.4893 6.0478 -0.3650 17 6 2.1460 -0.1865 -1.3966 18 1 -0.3633 -0.9603 -0.3660 19 1 -0.3633 0.7971 -0.6487 20 1 -0.3634 0.1632 1.0147 21 1 1.9533 -0.6616 0.7559 22 1 1.4945 2.1704 -0.4289 23 1 2.5650 1.7024 0.9626 24 1 4.0711 0.4399 -0.5035 25 1 3.8700 1.2849 -2.9904 26 1 2.6723 2.4416 -2.3611 27 1 5.4353 2.1893 -1.3661 28 1 5.3355 3.1344 -3.6026 29 1 4.1379 4.2914 -2.9740 30 1 5.8031 5.1237 -1.3355 31 1 7.0002 3.9663 -1.9645 32 1 8.5538 7.9773 -3.8651 33 1 2.5651 -1.1795 -1.5599 34 1 1.4941 0.1364 -2.2081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691911913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:36 Heat of formation + Delta-G solvation = -23.799916 kcal Electronic energy + Delta-G solvation = -12192.109511 eV Core-core repulsion = 10123.728073 eV Total energy + Delta-G solvation = -2068.381437 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.17305 -37.25063 -34.94440 -32.47940 -30.47592 -27.30550 -26.47800 -24.87137 -22.43351 -21.58794 -20.20497 -18.95819 -16.81957 -16.61953 -16.27621 -15.54787 -15.17728 -14.73389 -14.68377 -14.11785 -14.05546 -13.49386 -13.25738 -13.04208 -12.91134 -12.27537 -12.04838 -11.98023 -11.79615 -11.62812 -11.43359 -11.39670 -10.94497 -10.80430 -10.77600 -9.29276 -8.31019 -6.35979 1.36381 1.39144 1.52513 2.36594 3.04503 3.25978 3.73980 3.80937 3.88544 4.07906 4.35246 4.46394 4.54503 4.56992 4.68477 4.77019 4.84250 4.92777 4.94739 4.95774 5.01797 5.11830 5.23349 5.28823 5.32706 5.47136 5.54026 5.62656 5.72685 6.14998 6.24700 6.54969 6.72865 7.29109 8.85828 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.076885 B = 0.005540 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.092706 B = 5052.896113 C = 5214.918800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.126 4.126 4 C -0.108 4.108 5 C 0.069 3.931 6 N -0.693 5.693 7 C 0.085 3.915 8 C -0.004 4.004 9 C -0.537 4.537 10 H 0.030 0.970 11 C 0.005 3.995 12 N -0.951 5.951 13 Si 0.956 3.044 14 H -0.264 1.264 15 H -0.283 1.283 16 H -0.248 1.248 17 C -0.127 4.127 18 H 0.062 0.938 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.094 0.906 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.341 0.659 28 H 0.015 0.985 29 H 0.052 0.948 30 H 0.022 0.978 31 H 0.019 0.981 32 H 0.267 0.733 33 H 0.073 0.927 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.352 -16.200 9.556 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 C -0.164 4.164 4 C -0.126 4.126 5 C -0.060 4.060 6 N -0.324 5.324 7 C -0.044 4.044 8 C -0.042 4.042 9 C -0.575 4.575 10 H 0.049 0.951 11 C -0.192 4.192 12 N -0.592 5.592 13 Si 0.779 3.221 14 H -0.189 1.189 15 H -0.208 1.208 16 H -0.172 1.172 17 C -0.165 4.165 18 H 0.081 0.919 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.112 0.888 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.683 -15.622 9.822 21.841 hybrid contribution 1.080 0.055 -0.595 1.235 sum -10.602 -15.567 9.227 20.973 Atomic orbital electron populations 1.21714 0.94319 1.01895 1.01876 1.22459 0.96013 0.96997 0.97483 1.23025 0.97504 0.96658 0.99174 1.22532 0.97704 0.96086 0.96303 1.21993 0.94355 0.93446 0.96162 1.60517 1.12636 1.20434 1.38859 1.21630 0.97506 0.93591 0.91634 1.19434 0.94458 0.94470 0.95808 1.21425 1.18898 1.16665 1.00550 0.95126 1.26026 0.97599 0.94441 1.01107 1.70069 1.31909 1.21267 1.35918 0.85570 0.79154 0.77634 0.79745 1.18940 1.20839 1.17199 1.23005 0.97380 0.98690 0.97387 0.91880 0.93053 0.92314 0.88806 0.90915 0.92112 0.89110 0.95594 0.91881 0.84069 0.96697 0.92895 0.95931 0.96251 0.92376 0.90787 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.70 71.98 0.70 -1.37 16 2 C -0.11 -1.85 4.35 -10.27 -0.04 -1.90 16 3 C -0.13 -2.66 7.20 31.18 0.22 -2.43 16 4 C -0.11 -2.34 3.90 -10.21 -0.04 -2.38 16 5 C 0.07 1.91 5.53 86.30 0.48 2.38 16 6 N -0.69 -23.21 6.50 -513.90 -3.34 -26.55 16 7 C 0.09 3.55 5.62 86.31 0.49 4.04 16 8 C 0.00 -0.19 4.30 29.85 0.13 -0.06 16 9 C -0.54 -31.98 9.66 25.60 0.25 -31.74 16 10 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 11 C 0.01 0.31 5.47 84.66 0.46 0.77 16 12 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 13 Si 0.96 45.25 27.47 68.60 1.88 47.14 16 14 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 16 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 17 C -0.13 -2.24 7.20 31.12 0.22 -2.01 16 18 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 19 H 0.05 0.80 7.98 -2.39 -0.02 0.78 16 20 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 21 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 22 H 0.07 1.64 7.75 -2.39 -0.02 1.62 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 1.92 8.13 -2.39 -0.02 1.90 16 25 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 1.79 7.86 -2.39 -0.02 1.78 16 27 H 0.34 10.53 8.72 -89.69 -0.78 9.75 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 2.28 8.14 -2.38 -0.02 2.27 16 30 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 31 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 32 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 33 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 Total: -1.00 -65.21 276.33 1.91 -63.30 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.20 Total: 11.23 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 2.86 Total: -34.70 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -3.04 Total: -86.97 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Total: -65.21 1.91 -63.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691911913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.500 kcal (2) G-P(sol) polarization free energy of solvation -65.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds