Wall clock time and date at job start Mon Mar 30 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46907 * 110.99915 * 2 1 4 4 C 1.53001 * 109.47150 * 293.95095 * 3 2 1 5 5 C 1.50698 * 109.47306 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99672 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99808 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00388 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99494 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47508 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46862 * 120.00106 * 9 7 5 12 12 H 1.48504 * 109.47073 * 239.99500 * 9 7 5 13 13 C 1.46907 * 110.99983 * 123.94794 * 2 1 3 14 14 C 1.53003 * 109.46453 * 76.66951 * 13 2 1 15 15 C 1.53004 * 115.55750 * 78.99800 * 14 13 2 16 16 C 1.52990 * 117.50286 * 293.30704 * 14 13 2 17 17 C 1.52998 * 117.50056 * 224.67928 * 14 13 2 18 18 H 1.09000 * 109.47492 * 286.43048 * 1 2 3 19 19 H 1.08998 * 109.47119 * 46.42582 * 1 2 3 20 20 H 1.09000 * 109.47271 * 166.42655 * 1 2 3 21 21 H 1.08997 * 109.47068 * 53.95087 * 3 2 1 22 22 H 1.09003 * 109.46937 * 173.95242 * 3 2 1 23 23 H 1.09005 * 109.46691 * 300.00385 * 4 3 2 24 24 H 1.09003 * 109.46809 * 59.99501 * 4 3 2 25 25 H 0.96996 * 119.99844 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.47238 * 316.67762 * 13 2 1 27 27 H 1.08994 * 109.47043 * 196.67323 * 13 2 1 28 28 H 1.08993 * 109.47136 * 269.42711 * 15 14 13 29 29 H 1.08996 * 109.47190 * 29.42887 * 15 14 13 30 30 H 1.09002 * 109.46853 * 149.42722 * 15 14 13 31 31 H 1.09001 * 117.50258 * 145.02579 * 16 14 13 32 32 H 1.08997 * 117.50061 * 359.97438 * 16 14 13 33 33 H 1.09008 * 117.49290 * 0.02562 * 17 14 13 34 34 H 1.08997 * 117.50310 * 214.98835 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 -1.3183 5 6 2.1720 3.4642 -1.3186 6 1 2.7199 3.8322 -0.4638 7 6 1.9661 4.2816 -2.4097 8 7 1.2984 3.8335 -3.4504 9 14 2.6356 6.0254 -2.4097 10 1 3.3435 6.2840 -1.1301 11 1 3.5818 6.1924 -3.5420 12 1 1.5131 6.9866 -2.5568 13 6 1.9954 -0.7659 1.1377 14 6 1.8676 -2.2627 0.8476 15 6 2.9354 -2.8492 -0.0781 16 6 0.4565 -2.8469 0.7575 17 6 1.3370 -3.1571 1.9698 18 1 -0.3634 0.2907 0.9857 19 1 -0.3633 0.7083 -0.7445 20 1 -0.3634 -0.9990 -0.2412 21 1 1.5610 1.9274 0.8309 22 1 3.0797 1.3444 0.1083 23 1 2.0658 1.5015 -2.1492 24 1 0.5471 2.0844 -1.4266 25 1 1.1540 4.4085 -4.2181 26 1 1.4277 -0.5201 2.0351 27 1 3.0446 -0.5137 1.2911 28 1 2.5933 -2.7894 -1.1112 29 1 3.8611 -2.2843 0.0314 30 1 3.1125 -3.8917 0.1863 31 1 0.2888 -3.6492 0.0390 32 1 -0.3809 -2.1651 0.9055 33 1 1.0786 -2.6790 2.9147 34 1 1.7486 -4.1633 2.0487 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693840501.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:15 Heat of formation + Delta-G solvation = 18.286407 kcal Electronic energy + Delta-G solvation = -12654.001899 eV Core-core repulsion = 10587.445461 eV Total energy + Delta-G solvation = -2066.556438 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.71616 -35.86512 -32.89714 -29.68881 -28.74326 -26.87090 -25.27429 -22.56924 -22.28823 -19.82840 -18.79785 -16.38691 -15.32649 -15.07951 -14.54417 -14.38851 -13.88321 -13.12264 -12.83503 -12.50573 -12.28834 -12.13272 -11.53093 -11.39760 -11.21884 -10.99182 -10.85654 -10.66082 -10.52022 -9.94128 -9.83547 -9.59424 -9.20674 -9.06241 -8.30666 -7.61975 -5.97252 -3.99407 3.32595 3.39869 3.43972 3.82181 4.45763 4.67320 4.87765 4.97911 5.16973 5.22847 5.38572 5.68711 5.72140 5.84960 5.90266 5.94657 6.01257 6.06919 6.14387 6.21925 6.29570 6.35627 6.49014 6.53281 6.59954 7.01724 7.57298 7.64754 7.85354 7.95105 8.13039 8.47037 9.08328 9.64088 11.14241 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.072500 B = 0.006610 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.112443 B = 4234.893220 C = 4285.984445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.536 5.536 3 C 0.062 3.938 4 C 0.027 3.973 5 C -0.521 4.521 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.090 3.910 14 C -0.110 4.110 15 C -0.105 4.105 16 C -0.178 4.178 17 C -0.183 4.183 18 H 0.013 0.987 19 H 0.077 0.923 20 H 0.067 0.933 21 H 0.017 0.983 22 H 0.059 0.941 23 H 0.025 0.975 24 H 0.018 0.982 25 H 0.260 0.740 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 -11.486 8.413 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.260 5.260 3 C -0.065 4.065 4 C -0.010 4.010 5 C -0.560 4.560 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.039 4.039 14 C -0.110 4.110 15 C -0.162 4.162 16 C -0.215 4.215 17 C -0.220 4.220 18 H 0.031 0.969 19 H 0.095 0.905 20 H 0.086 0.914 21 H 0.035 0.965 22 H 0.078 0.922 23 H 0.043 0.957 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.036 -11.646 7.808 14.021 hybrid contribution -0.007 1.398 0.683 1.556 sum -0.042 -10.248 8.492 13.309 Atomic orbital electron populations 1.22688 0.88324 1.02329 0.99836 1.61960 1.07428 1.15412 1.41173 1.22367 0.98406 0.85458 1.00252 1.19118 0.96862 0.93995 0.91039 1.21245 1.34966 0.97840 1.01905 0.92791 1.24994 0.95323 0.98452 0.95577 1.69984 1.40938 1.36320 1.06053 0.86547 0.78733 0.84803 0.77972 1.19795 1.20979 1.21058 1.21674 1.00014 0.90572 0.91610 1.21449 0.95711 0.93988 0.99884 1.21221 0.97238 0.98727 0.98993 1.23161 0.94627 1.03233 1.00430 1.23143 1.05131 1.00262 0.93508 0.96852 0.90452 0.91427 0.96483 0.92240 0.95705 0.96424 0.93077 0.95403 0.90929 0.91805 0.92241 0.93448 0.89141 0.88331 0.89374 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.63 60.06 0.52 0.80 16 2 N -0.54 -10.11 4.69 -242.91 -1.14 -11.25 16 3 C 0.06 1.35 4.88 -3.82 -0.02 1.33 16 4 C 0.03 0.72 4.93 -27.88 -0.14 0.59 16 5 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 6 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.09 1.40 5.01 -3.82 -0.02 1.38 16 14 C -0.11 -1.48 2.30 -154.51 -0.36 -1.84 16 15 C -0.10 -1.35 9.89 37.16 0.37 -0.98 16 16 C -0.18 -2.21 8.57 -26.74 -0.23 -2.43 16 17 C -0.18 -2.08 9.82 -26.73 -0.26 -2.34 16 18 H 0.01 0.22 7.86 -51.93 -0.41 -0.19 16 19 H 0.08 1.52 5.99 -51.93 -0.31 1.21 16 20 H 0.07 1.05 5.09 -51.93 -0.26 0.79 16 21 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 22 H 0.06 1.28 7.82 -51.93 -0.41 0.87 16 23 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.02 0.49 6.31 -51.93 -0.33 0.16 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.03 0.42 7.62 -51.93 -0.40 0.03 16 27 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.77 7.94 -51.93 -0.41 0.36 16 30 H 0.05 0.52 7.88 -51.93 -0.41 0.11 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.25 5.78 -51.93 -0.30 0.95 16 33 H 0.09 0.96 8.09 -51.92 -0.42 0.54 16 34 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 272.00 15.07 4.10 4.10 Total: -1.00 -30.01 272.00 -7.57 -37.57 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.70 Total: -3.55 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.55 Total: -17.22 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.40 Total: -37.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.01 -7.57 -37.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693840501.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.860 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds