Wall clock time and date at job start Mon Mar 30 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46907 * 110.99915 * 2 1 4 4 C 1.53001 * 109.47150 * 293.95095 * 3 2 1 5 5 C 1.50698 * 109.47306 * 180.02562 * 4 3 2 6 6 H 1.07996 * 119.99672 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99808 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00388 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99494 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47508 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46862 * 120.00106 * 9 7 5 12 12 H 1.48504 * 109.47073 * 239.99500 * 9 7 5 13 13 C 1.46907 * 110.99983 * 123.94794 * 2 1 3 14 14 C 1.53003 * 109.46453 * 76.66951 * 13 2 1 15 15 C 1.53004 * 115.55750 * 78.99800 * 14 13 2 16 16 C 1.52990 * 117.50286 * 293.30704 * 14 13 2 17 17 C 1.52998 * 117.50056 * 224.67928 * 14 13 2 18 18 H 1.09000 * 109.47492 * 286.43048 * 1 2 3 19 19 H 1.08998 * 109.47119 * 46.42582 * 1 2 3 20 20 H 1.09000 * 109.47271 * 166.42655 * 1 2 3 21 21 H 1.08997 * 109.47068 * 53.95087 * 3 2 1 22 22 H 1.09003 * 109.46937 * 173.95242 * 3 2 1 23 23 H 1.09005 * 109.46691 * 300.00385 * 4 3 2 24 24 H 1.09003 * 109.46809 * 59.99501 * 4 3 2 25 25 H 0.96996 * 119.99844 * 180.02562 * 8 7 5 26 26 H 1.08997 * 109.47238 * 316.67762 * 13 2 1 27 27 H 1.08994 * 109.47043 * 196.67323 * 13 2 1 28 28 H 1.08993 * 109.47136 * 269.42711 * 15 14 13 29 29 H 1.08996 * 109.47190 * 29.42887 * 15 14 13 30 30 H 1.09002 * 109.46853 * 149.42722 * 15 14 13 31 31 H 1.09001 * 117.50258 * 145.02579 * 16 14 13 32 32 H 1.08997 * 117.50061 * 359.97438 * 16 14 13 33 33 H 1.09008 * 117.49290 * 0.02562 * 17 14 13 34 34 H 1.08997 * 117.50310 * 214.98835 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 -1.3183 5 6 2.1720 3.4642 -1.3186 6 1 2.7199 3.8322 -0.4638 7 6 1.9661 4.2816 -2.4097 8 7 1.2984 3.8335 -3.4504 9 14 2.6356 6.0254 -2.4097 10 1 3.3435 6.2840 -1.1301 11 1 3.5818 6.1924 -3.5420 12 1 1.5131 6.9866 -2.5568 13 6 1.9954 -0.7659 1.1377 14 6 1.8676 -2.2627 0.8476 15 6 2.9354 -2.8492 -0.0781 16 6 0.4565 -2.8469 0.7575 17 6 1.3370 -3.1571 1.9698 18 1 -0.3634 0.2907 0.9857 19 1 -0.3633 0.7083 -0.7445 20 1 -0.3634 -0.9990 -0.2412 21 1 1.5610 1.9274 0.8309 22 1 3.0797 1.3444 0.1083 23 1 2.0658 1.5015 -2.1492 24 1 0.5471 2.0844 -1.4266 25 1 1.1540 4.4085 -4.2181 26 1 1.4277 -0.5201 2.0351 27 1 3.0446 -0.5137 1.2911 28 1 2.5933 -2.7894 -1.1112 29 1 3.8611 -2.2843 0.0314 30 1 3.1125 -3.8917 0.1863 31 1 0.2888 -3.6492 0.0390 32 1 -0.3809 -2.1651 0.9055 33 1 1.0786 -2.6790 2.9147 34 1 1.7486 -4.1633 2.0487 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693840501.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:15 Heat of formation + Delta-G solvation = -0.167407 kcal Electronic energy + Delta-G solvation = -12654.802116 eV Core-core repulsion = 10587.445461 eV Total energy + Delta-G solvation = -2067.356655 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90635 -37.32113 -35.01430 -31.64190 -29.84760 -28.14166 -27.17560 -24.36191 -23.22273 -21.63558 -19.89061 -18.56475 -16.60044 -16.45987 -16.38896 -15.96491 -15.23415 -14.64357 -14.25945 -14.01763 -13.83338 -13.48127 -13.16033 -12.86987 -12.68435 -12.59011 -12.38729 -12.14672 -11.96983 -11.76691 -11.42412 -11.25791 -10.80424 -10.56302 -10.48648 -9.12196 -8.20256 -6.31709 1.40066 1.40643 1.54040 2.39988 2.75391 3.13067 3.37178 3.86732 3.90162 4.12092 4.14787 4.34170 4.43345 4.60171 4.65065 4.77506 4.80193 4.85661 4.99658 5.03337 5.05766 5.09079 5.16686 5.25247 5.33240 5.45825 5.46553 5.67743 5.78876 6.11580 6.34099 6.35764 6.85818 7.37457 8.92262 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.072500 B = 0.006610 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.112443 B = 4234.893220 C = 4285.984445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.078 3.922 4 C 0.035 3.965 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.090 3.910 14 C -0.131 4.131 15 C -0.102 4.102 16 C -0.182 4.182 17 C -0.159 4.159 18 H 0.025 0.975 19 H 0.047 0.953 20 H 0.089 0.911 21 H 0.017 0.983 22 H 0.061 0.939 23 H -0.009 1.009 24 H -0.004 1.004 25 H 0.264 0.736 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -11.869 9.798 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.049 4.049 4 C -0.002 4.002 5 C -0.583 4.583 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.037 4.037 14 C -0.131 4.131 15 C -0.159 4.159 16 C -0.219 4.219 17 C -0.196 4.196 18 H 0.044 0.956 19 H 0.066 0.934 20 H 0.108 0.892 21 H 0.035 0.965 22 H 0.080 0.920 23 H 0.010 0.990 24 H 0.014 0.986 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.394 -12.047 9.212 15.170 hybrid contribution -0.169 1.453 0.252 1.484 sum 0.224 -10.594 9.463 14.207 Atomic orbital electron populations 1.22658 0.87655 1.02807 0.99565 1.61907 1.08168 1.13690 1.43429 1.22005 0.98554 0.87061 0.97309 1.18949 0.95057 0.93677 0.92523 1.21662 1.35283 0.98985 1.02358 0.92250 1.25975 0.95396 1.03333 0.94997 1.70120 1.42056 1.38258 1.06833 0.85362 0.78199 0.78752 0.78487 1.18577 1.20271 1.20294 1.21727 0.99831 0.91633 0.90515 1.21416 0.96768 0.92838 1.02091 1.21192 0.96722 1.00026 0.97975 1.23208 0.93775 1.03331 1.01590 1.23212 1.02979 1.00476 0.92933 0.95608 0.93432 0.89242 0.96456 0.92015 0.99040 0.98595 0.92736 0.94610 0.91002 0.93490 0.92893 0.91201 0.88332 0.88752 0.88628 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 8.63 127.69 1.10 1.83 16 2 N -0.55 -20.63 4.69 -922.44 -4.32 -24.95 16 3 C 0.08 3.45 4.88 86.30 0.42 3.87 16 4 C 0.04 1.95 4.93 29.85 0.15 2.10 16 5 C -0.54 -31.83 9.11 25.60 0.23 -31.59 16 6 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 7 C 0.00 0.05 5.46 84.65 0.46 0.51 16 8 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 9 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.09 2.71 5.01 86.30 0.43 3.15 16 14 C -0.13 -3.27 2.30 -52.18 -0.12 -3.39 16 15 C -0.10 -2.48 9.89 71.98 0.71 -1.77 16 16 C -0.18 -4.09 8.57 30.59 0.26 -3.83 16 17 C -0.16 -3.07 9.82 30.59 0.30 -2.77 16 18 H 0.03 0.82 7.86 -2.39 -0.02 0.80 16 19 H 0.05 1.93 5.99 -2.39 -0.01 1.92 16 20 H 0.09 2.71 5.09 -2.39 -0.01 2.70 16 21 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 22 H 0.06 2.66 7.82 -2.39 -0.02 2.64 16 23 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 24 H 0.00 -0.25 6.31 -2.39 -0.02 -0.26 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.04 1.02 7.62 -2.39 -0.02 1.00 16 27 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 28 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.33 7.94 -2.39 -0.02 1.31 16 30 H 0.07 1.35 7.88 -2.39 -0.02 1.33 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 2.19 5.78 -2.39 -0.01 2.18 16 33 H 0.10 1.74 8.09 -2.38 -0.02 1.72 16 34 H 0.11 1.74 8.03 -2.39 -0.02 1.72 16 Total: -1.00 -64.52 272.00 2.98 -61.54 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.04 Total: 6.05 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 3.95 Total: -31.89 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -4.04 Total: -82.61 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -64.52 2.98 -61.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693840501.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.372 kcal (2) G-P(sol) polarization free energy of solvation -64.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds