Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 111.00007 * 2 1 4 4 C 1.50698 * 109.46935 * 66.04946 * 3 2 1 5 5 H 1.07997 * 119.99788 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99715 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00482 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99840 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47470 * 59.99611 * 8 6 4 10 10 H 1.48501 * 109.47240 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46929 * 299.99884 * 8 6 4 12 12 C 1.46903 * 111.00256 * 236.04853 * 2 1 3 13 13 H 1.09001 * 112.85004 * 74.31923 * 12 2 1 14 14 C 1.53781 * 113.61229 * 303.13400 * 12 2 1 15 15 C 1.53785 * 87.17236 * 219.88907 * 14 12 2 16 16 C 1.53773 * 113.69392 * 205.59468 * 12 2 1 17 17 C 1.52998 * 113.61432 * 254.53901 * 16 12 2 18 18 C 1.52997 * 113.61438 * 25.44275 * 16 12 2 19 19 H 1.08997 * 109.47294 * 187.95285 * 1 2 3 20 20 H 1.08997 * 109.47114 * 307.95480 * 1 2 3 21 21 H 1.09004 * 109.46909 * 67.95178 * 1 2 3 22 22 H 1.08997 * 109.46900 * 186.04658 * 3 2 1 23 23 H 1.08999 * 109.47206 * 306.04849 * 3 2 1 24 24 H 0.96994 * 120.00195 * 180.02562 * 7 6 4 25 25 H 1.09003 * 113.61451 * 334.47715 * 14 12 2 26 26 H 1.08995 * 113.61735 * 105.30040 * 14 12 2 27 27 H 1.08997 * 113.61639 * 140.02034 * 15 14 12 28 28 H 1.09003 * 113.61224 * 270.92543 * 15 14 12 29 29 H 1.08994 * 109.47390 * 60.00153 * 17 16 12 30 30 H 1.09005 * 109.47461 * 180.02562 * 17 16 12 31 31 H 1.09005 * 109.47017 * 299.99674 * 17 16 12 32 32 H 1.08997 * 109.47627 * 62.18391 * 18 16 12 33 33 H 1.09003 * 109.46883 * 182.18778 * 18 16 12 34 34 H 1.09002 * 109.46967 * 302.18356 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0740 1.5114 2.0484 6 6 2.0268 3.3494 1.5285 7 7 2.7111 4.0023 0.6146 8 14 1.5819 4.1872 3.1377 9 1 2.1735 3.4302 4.2701 10 1 2.1131 5.5739 3.1373 11 1 0.1046 4.2236 3.2849 12 6 1.9955 -0.7659 -1.1376 13 1 1.8937 -0.2388 -2.0862 14 6 1.4972 -2.2200 -1.1846 15 6 2.9198 -2.6133 -1.6167 16 6 3.4025 -1.3385 -0.8989 17 6 4.5044 -0.5908 -1.6522 18 6 3.7333 -1.5554 0.5791 19 1 -0.3634 -1.0177 0.1422 20 1 -0.3633 0.6320 0.8103 21 1 -0.3633 0.3858 -0.9526 22 1 3.0797 1.3444 -0.1082 23 1 1.5611 1.9274 -0.8309 24 1 2.9856 4.9183 0.7766 25 1 1.2120 -2.6156 -0.2098 26 1 0.7431 -2.3987 -1.9510 27 1 3.2761 -3.5357 -1.1582 28 1 3.0703 -2.5902 -2.6960 29 1 4.5192 0.4516 -1.3340 30 1 5.4688 -1.0507 -1.4361 31 1 4.3104 -0.6409 -2.7237 32 1 3.0433 -2.2853 1.0026 33 1 4.7547 -1.9242 0.6725 34 1 3.6374 -0.6112 1.1152 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694310473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = 11.716576 kcal Electronic energy + Delta-G solvation = -13278.563852 eV Core-core repulsion = 11211.722525 eV Total energy + Delta-G solvation = -2066.841327 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.44993 -34.86372 -32.29309 -30.18452 -27.02584 -26.81289 -25.71436 -23.40385 -21.82506 -20.36492 -17.60318 -16.21281 -15.21257 -14.63517 -14.40703 -14.09606 -13.36679 -12.82076 -12.56497 -12.38650 -11.94789 -11.62729 -11.52504 -11.19342 -11.05788 -10.94336 -10.84027 -10.57922 -10.37708 -10.10114 -9.82820 -9.72410 -9.34180 -8.98784 -8.38305 -7.13012 -5.98268 -3.99129 3.35456 3.39403 3.42439 4.45890 4.95611 5.02447 5.11495 5.27083 5.36789 5.49917 5.77797 5.96892 6.01013 6.05643 6.15648 6.22465 6.28163 6.29678 6.38572 6.45359 6.52277 6.64134 6.81488 6.83057 6.99931 7.15535 7.43034 7.45401 7.86995 8.19271 8.30414 8.65121 9.08961 9.64714 11.12506 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.047118 B = 0.010101 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.112131 B = 2771.255791 C = 2992.634427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.526 5.526 3 C 0.193 3.807 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.064 3.936 13 H 0.050 0.950 14 C -0.131 4.131 15 C -0.137 4.137 16 C -0.069 4.069 17 C -0.138 4.138 18 C -0.111 4.111 19 H 0.044 0.956 20 H 0.073 0.927 21 H 0.006 0.994 22 H 0.033 0.967 23 H -0.014 1.014 24 H 0.261 0.739 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 -10.163 -3.327 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.250 5.250 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.045 4.045 13 H 0.068 0.932 14 C -0.169 4.169 15 C -0.174 4.174 16 C -0.069 4.069 17 C -0.195 4.195 18 C -0.168 4.168 19 H 0.063 0.937 20 H 0.092 0.908 21 H 0.025 0.975 22 H 0.051 0.949 23 H 0.003 0.997 24 H 0.070 0.930 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.349 -10.198 -2.928 10.616 hybrid contribution -0.507 1.060 -0.026 1.175 sum -0.158 -9.139 -2.954 9.605 Atomic orbital electron populations 1.22161 0.89339 0.99725 0.99853 1.62309 1.06354 1.17589 1.38739 1.19708 0.95615 0.81725 0.96147 1.21148 1.34615 0.96857 1.01790 0.92007 1.24979 0.95413 0.97374 0.96848 1.69949 1.38509 1.11417 1.34017 0.86597 0.78651 0.78360 0.83998 1.20194 1.21424 1.20375 1.23107 0.95363 0.92891 0.93152 0.93191 1.22934 0.95981 0.96871 1.01127 1.23008 0.97037 0.97809 0.99586 1.21832 0.94178 0.94660 0.96241 1.21786 0.97577 1.01236 0.98891 1.21360 0.98569 1.03133 0.93740 0.93718 0.90833 0.97550 0.94888 0.99660 0.92972 0.89683 0.92668 0.91805 0.90921 0.91710 0.93259 0.93470 0.93158 0.94397 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.13 60.06 0.55 1.31 16 2 N -0.53 -11.47 3.61 -235.35 -0.85 -12.32 16 3 C 0.19 5.08 4.38 -4.97 -0.02 5.06 16 4 C -0.51 -14.27 8.40 -34.44 -0.29 -14.56 16 5 H 0.06 1.73 7.16 -52.49 -0.38 1.35 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.06 1.20 2.64 -66.90 -0.18 1.02 16 13 H 0.05 0.99 8.10 -51.93 -0.42 0.56 16 14 C -0.13 -2.01 6.33 -25.92 -0.16 -2.17 16 15 C -0.14 -1.92 7.20 -25.77 -0.19 -2.11 16 16 C -0.07 -1.15 1.11 -153.56 -0.17 -1.32 16 17 C -0.14 -2.25 9.19 37.16 0.34 -1.91 16 18 C -0.11 -1.92 8.55 37.16 0.32 -1.60 16 19 H 0.04 0.77 7.25 -51.93 -0.38 0.40 16 20 H 0.07 1.58 6.68 -51.93 -0.35 1.23 16 21 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 22 H 0.03 0.92 6.62 -51.93 -0.34 0.58 16 23 H -0.01 -0.41 8.12 -51.93 -0.42 -0.84 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.08 1.32 7.47 -51.93 -0.39 0.93 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 28 H 0.07 0.94 7.97 -51.93 -0.41 0.53 16 29 H 0.06 1.23 6.98 -51.93 -0.36 0.87 16 30 H 0.05 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.05 0.70 7.95 -51.93 -0.41 0.29 16 32 H 0.05 0.83 7.36 -51.93 -0.38 0.45 16 33 H 0.04 0.58 8.13 -51.93 -0.42 0.15 16 34 H 0.08 1.64 7.30 -51.93 -0.38 1.26 16 LS Contribution 268.04 15.07 4.04 4.04 Total: -1.00 -29.11 268.04 -6.86 -35.97 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.87 Total: -3.49 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 0.10 Total: -14.82 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: -0.11 Total: -38.51 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.11 -6.86 -35.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694310473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.686 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds