Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 111.00007 * 2 1 4 4 C 1.50698 * 109.46935 * 66.04946 * 3 2 1 5 5 H 1.07997 * 119.99788 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99715 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00482 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99840 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47470 * 59.99611 * 8 6 4 10 10 H 1.48501 * 109.47240 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46929 * 299.99884 * 8 6 4 12 12 C 1.46903 * 111.00256 * 236.04853 * 2 1 3 13 13 H 1.09001 * 112.85004 * 74.31923 * 12 2 1 14 14 C 1.53781 * 113.61229 * 303.13400 * 12 2 1 15 15 C 1.53785 * 87.17236 * 219.88907 * 14 12 2 16 16 C 1.53773 * 113.69392 * 205.59468 * 12 2 1 17 17 C 1.52998 * 113.61432 * 254.53901 * 16 12 2 18 18 C 1.52997 * 113.61438 * 25.44275 * 16 12 2 19 19 H 1.08997 * 109.47294 * 187.95285 * 1 2 3 20 20 H 1.08997 * 109.47114 * 307.95480 * 1 2 3 21 21 H 1.09004 * 109.46909 * 67.95178 * 1 2 3 22 22 H 1.08997 * 109.46900 * 186.04658 * 3 2 1 23 23 H 1.08999 * 109.47206 * 306.04849 * 3 2 1 24 24 H 0.96994 * 120.00195 * 180.02562 * 7 6 4 25 25 H 1.09003 * 113.61451 * 334.47715 * 14 12 2 26 26 H 1.08995 * 113.61735 * 105.30040 * 14 12 2 27 27 H 1.08997 * 113.61639 * 140.02034 * 15 14 12 28 28 H 1.09003 * 113.61224 * 270.92543 * 15 14 12 29 29 H 1.08994 * 109.47390 * 60.00153 * 17 16 12 30 30 H 1.09005 * 109.47461 * 180.02562 * 17 16 12 31 31 H 1.09005 * 109.47017 * 299.99674 * 17 16 12 32 32 H 1.08997 * 109.47627 * 62.18391 * 18 16 12 33 33 H 1.09003 * 109.46883 * 182.18778 * 18 16 12 34 34 H 1.09002 * 109.46967 * 302.18356 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0740 1.5114 2.0484 6 6 2.0268 3.3494 1.5285 7 7 2.7111 4.0023 0.6146 8 14 1.5819 4.1872 3.1377 9 1 2.1735 3.4302 4.2701 10 1 2.1131 5.5739 3.1373 11 1 0.1046 4.2236 3.2849 12 6 1.9955 -0.7659 -1.1376 13 1 1.8937 -0.2388 -2.0862 14 6 1.4972 -2.2200 -1.1846 15 6 2.9198 -2.6133 -1.6167 16 6 3.4025 -1.3385 -0.8989 17 6 4.5044 -0.5908 -1.6522 18 6 3.7333 -1.5554 0.5791 19 1 -0.3634 -1.0177 0.1422 20 1 -0.3633 0.6320 0.8103 21 1 -0.3633 0.3858 -0.9526 22 1 3.0797 1.3444 -0.1082 23 1 1.5611 1.9274 -0.8309 24 1 2.9856 4.9183 0.7766 25 1 1.2120 -2.6156 -0.2098 26 1 0.7431 -2.3987 -1.9510 27 1 3.2761 -3.5357 -1.1582 28 1 3.0703 -2.5902 -2.6960 29 1 4.5192 0.4516 -1.3340 30 1 5.4688 -1.0507 -1.4361 31 1 4.3104 -0.6409 -2.7237 32 1 3.0433 -2.2853 1.0026 33 1 4.7547 -1.9242 0.6725 34 1 3.6374 -0.6112 1.1152 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694310473.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = -5.825191 kcal Electronic energy + Delta-G solvation = -13279.324520 eV Core-core repulsion = 11211.722525 eV Total energy + Delta-G solvation = -2067.601995 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.84795 -36.65326 -34.40308 -31.56457 -29.05739 -28.18623 -27.33622 -25.12241 -23.24614 -22.10799 -19.09208 -18.29779 -16.89244 -16.45635 -15.92304 -15.66179 -15.02891 -14.27769 -14.17403 -13.97728 -13.72755 -13.28234 -12.93416 -12.93323 -12.76423 -12.57378 -12.29977 -12.26618 -12.19581 -11.69017 -11.44312 -11.42641 -10.75655 -10.70160 -10.58068 -8.94227 -8.18971 -6.28903 1.39693 1.43085 1.50893 2.40355 3.13027 3.42383 3.73020 3.75496 3.98299 4.07600 4.45142 4.51151 4.68554 4.75046 4.77037 4.86113 4.88858 4.98307 5.07422 5.10822 5.12592 5.18222 5.20851 5.28700 5.41899 5.47103 5.63102 5.71310 5.79025 6.11307 6.39715 6.75121 6.88431 7.40645 8.91853 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.047118 B = 0.010101 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.112131 B = 2771.255791 C = 2992.634427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.528 5.528 3 C 0.214 3.786 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.968 3.032 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.043 3.957 13 H 0.034 0.966 14 C -0.119 4.119 15 C -0.115 4.115 16 C -0.079 4.079 17 C -0.134 4.134 18 C -0.104 4.104 19 H 0.079 0.921 20 H 0.054 0.946 21 H 0.003 0.997 22 H 0.007 0.993 23 H -0.053 1.053 24 H 0.263 0.737 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 -12.073 -2.934 12.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.251 5.251 3 C 0.087 3.913 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.193 1.193 12 C -0.066 4.066 13 H 0.052 0.948 14 C -0.156 4.156 15 C -0.152 4.152 16 C -0.080 4.080 17 C -0.192 4.192 18 C -0.161 4.161 19 H 0.098 0.902 20 H 0.073 0.927 21 H 0.022 0.978 22 H 0.025 0.975 23 H -0.035 1.035 24 H 0.072 0.928 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.014 -12.133 -2.538 12.396 hybrid contribution -0.385 1.636 -0.196 1.692 sum -0.399 -10.497 -2.734 10.854 Atomic orbital electron populations 1.22171 0.88290 1.01407 0.98952 1.62270 1.07359 1.14788 1.40711 1.19293 0.93855 0.83981 0.94136 1.21460 1.34630 0.97452 1.02416 0.91960 1.25918 0.95109 0.98101 1.00628 1.70091 1.39515 1.11808 1.36205 0.85465 0.78800 0.77185 0.79339 1.19259 1.20889 1.19282 1.23382 0.97645 0.94310 0.91249 0.94772 1.22892 0.97476 0.93287 1.01958 1.22921 0.95165 0.96810 1.00346 1.21961 0.93104 0.96437 0.96450 1.21753 0.98805 0.98922 0.99670 1.21268 1.00172 1.01055 0.93648 0.90215 0.92744 0.97809 0.97455 1.03501 0.92808 0.89442 0.90851 0.89508 0.89283 0.95707 0.91237 0.92070 0.92206 0.92357 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.13 127.69 1.17 2.77 16 2 N -0.53 -23.38 3.61 -898.52 -3.24 -26.63 16 3 C 0.21 11.80 4.38 85.55 0.37 12.18 16 4 C -0.52 -30.29 8.40 25.60 0.22 -30.08 16 5 H 0.06 3.54 7.16 -2.91 -0.02 3.52 16 6 C 0.00 0.01 5.46 84.65 0.46 0.47 16 7 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 8 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.04 1.58 2.64 45.44 0.12 1.70 16 13 H 0.03 1.37 8.10 -2.39 -0.02 1.35 16 14 C -0.12 -3.26 6.33 31.12 0.20 -3.06 16 15 C -0.11 -2.80 7.20 31.22 0.22 -2.57 16 16 C -0.08 -2.56 1.11 -51.57 -0.06 -2.62 16 17 C -0.13 -4.35 9.19 71.98 0.66 -3.69 16 18 C -0.10 -3.50 8.55 71.98 0.62 -2.89 16 19 H 0.08 2.61 7.25 -2.39 -0.02 2.59 16 20 H 0.05 2.35 6.68 -2.39 -0.02 2.34 16 21 H 0.00 0.13 8.14 -2.38 -0.02 0.12 16 22 H 0.01 0.44 6.62 -2.39 -0.02 0.42 16 23 H -0.05 -3.23 8.12 -2.39 -0.02 -3.25 16 24 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.09 2.40 7.47 -2.39 -0.02 2.38 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 28 H 0.09 1.93 7.97 -2.39 -0.02 1.91 16 29 H 0.02 0.97 6.98 -2.39 -0.02 0.95 16 30 H 0.07 1.93 8.13 -2.38 -0.02 1.91 16 31 H 0.06 1.76 7.95 -2.38 -0.02 1.74 16 32 H 0.06 1.85 7.36 -2.39 -0.02 1.84 16 33 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 34 H 0.03 1.49 7.30 -2.39 -0.02 1.48 16 Total: -1.00 -64.61 268.04 4.08 -60.53 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.04 Total: 4.14 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.98 Total: -27.79 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.96 Total: -84.09 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.61 4.08 -60.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694310473.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.701 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds