Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53514 * 114.17147 * 2 1 4 4 N 1.47470 * 87.93187 * 87.81454 * 3 2 1 5 5 C 1.46901 * 111.00419 * 138.70507 * 4 3 2 6 6 C 1.52992 * 109.47859 * 170.00112 * 5 4 3 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46828 * 90.00636 * 13 11 9 15 15 H 1.48494 * 109.47178 * 210.00332 * 13 11 9 16 16 H 1.48500 * 109.47075 * 330.00579 * 13 11 9 17 17 C 1.47485 * 87.83976 * 27.01193 * 4 3 2 18 18 H 1.08999 * 109.47168 * 59.99611 * 1 2 3 19 19 H 1.09000 * 109.47358 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46992 * 300.00052 * 1 2 3 21 21 H 1.09004 * 113.25309 * 227.05319 * 2 1 3 22 22 H 1.09001 * 113.47213 * 333.04908 * 3 2 1 23 23 H 1.08994 * 113.47633 * 202.58439 * 3 2 1 24 24 H 1.09002 * 109.46980 * 49.99771 * 5 4 3 25 25 H 1.09001 * 109.46628 * 290.00192 * 5 4 3 26 26 H 1.09002 * 109.47103 * 59.99734 * 6 5 4 27 27 H 1.08998 * 109.46862 * 300.00546 * 6 5 4 28 28 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 29 29 H 1.09001 * 109.46832 * 299.99974 * 7 6 5 30 30 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 31 31 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 32 32 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 33 33 H 1.08995 * 113.47551 * 87.74830 * 17 4 3 34 34 H 1.08998 * 113.47679 * 218.22920 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1586 1.4005 0.0000 4 7 2.0855 1.3750 1.4727 5 6 3.3049 1.9356 2.0702 6 6 3.0961 2.1235 3.5741 7 6 4.3663 2.7068 4.1964 8 6 4.1577 2.8941 5.7005 9 6 5.4091 3.4680 6.3135 10 1 6.2671 3.6785 5.6923 11 6 5.4581 3.7254 7.6672 12 7 4.4131 3.4696 8.4234 13 14 7.0095 4.4361 8.4271 14 1 6.9394 5.9192 8.3999 15 1 7.1297 3.9720 9.8326 16 1 8.1927 3.9821 7.6530 17 6 2.1629 -0.0958 1.3953 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 1.9603 -0.6823 -0.7331 22 1 1.5233 2.1616 -0.4531 23 1 3.1785 1.4187 -0.3839 24 1 3.5247 2.8992 1.6106 25 1 4.1385 1.2539 1.9015 26 1 2.8762 1.1599 4.0336 27 1 2.2624 2.8051 3.7427 28 1 4.5866 3.6703 3.7369 29 1 5.1997 2.0248 4.0277 30 1 3.3242 3.5759 5.8695 31 1 3.9376 1.9304 6.1596 32 1 4.4474 3.6509 9.3757 33 1 3.1840 -0.4769 1.3837 34 1 1.5311 -0.6028 2.1247 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698502870.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = 6.382471 kcal Electronic energy + Delta-G solvation = -12209.611630 eV Core-core repulsion = 10142.538999 eV Total energy + Delta-G solvation = -2067.072631 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.19017 -34.99483 -32.80427 -31.13138 -28.44049 -25.99670 -25.66875 -23.50857 -21.22565 -19.97829 -19.00861 -16.24295 -16.04107 -15.51681 -14.92507 -14.41719 -14.00001 -13.32021 -12.85867 -12.68740 -12.39034 -12.00089 -11.72036 -11.50074 -11.24899 -10.92214 -10.75975 -10.49364 -10.41046 -10.36591 -10.27280 -9.57895 -9.21461 -8.97034 -8.76190 -8.29681 -5.94684 -3.96935 3.34690 3.40527 3.44099 4.05432 4.28247 4.50041 4.78506 5.05262 5.14892 5.29855 5.37257 5.40717 5.54452 5.57113 5.65131 5.81206 5.86430 5.91809 5.95062 6.08510 6.25427 6.32324 6.41705 6.63461 6.89545 7.02865 7.12655 7.28982 7.74744 7.91204 8.06751 8.49498 9.10630 9.66717 11.16720 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.100612 B = 0.005100 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.230676 B = 5488.876068 C = 5627.043040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C -0.002 4.002 4 N -0.470 5.470 5 C 0.020 3.980 6 C -0.107 4.107 7 C -0.110 4.110 8 C 0.021 3.979 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.000 4.000 18 H 0.055 0.945 19 H 0.054 0.946 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 -6.305 -15.942 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C -0.131 4.131 4 N -0.192 5.192 5 C -0.109 4.109 6 C -0.145 4.145 7 C -0.148 4.148 8 C -0.016 4.016 9 C -0.558 4.558 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.129 4.129 18 H 0.074 0.926 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.096 0.904 22 H 0.100 0.900 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.523 -5.940 -15.376 17.385 hybrid contribution 1.701 0.108 0.207 1.717 sum -3.822 -5.832 -15.169 16.695 Atomic orbital electron populations 1.21471 0.92977 1.01491 1.02494 1.22575 0.96898 0.97182 0.97475 1.23855 1.00111 0.97704 0.91472 1.68921 1.35144 1.07598 1.07523 1.22809 0.90655 0.99657 0.97739 1.21520 0.99729 1.01210 0.92043 1.21613 0.94954 0.98855 0.99377 1.19091 0.96872 0.96914 0.88748 1.21298 0.99706 1.41831 0.92993 0.92801 1.25033 0.96225 0.95852 0.97410 1.69970 1.29336 1.48713 1.05559 0.86611 0.83689 0.79325 0.78472 1.20683 1.21234 1.19925 1.23936 1.00349 0.91451 0.97130 0.92580 0.92700 0.91399 0.90404 0.90005 0.91705 0.91317 0.94084 0.92715 0.91871 0.93571 0.93768 0.96615 0.96713 0.93060 0.91452 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 9.72 37.16 0.36 -0.80 16 2 C -0.12 -1.21 4.76 -90.09 -0.43 -1.64 16 3 C 0.00 -0.03 7.26 -7.55 -0.05 -0.08 16 4 N -0.47 -6.51 6.14 -244.63 -1.50 -8.02 16 5 C 0.02 0.30 4.82 -3.83 -0.02 0.28 16 6 C -0.11 -1.97 5.54 -26.74 -0.15 -2.12 16 7 C -0.11 -2.37 5.15 -26.73 -0.14 -2.51 16 8 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 9 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 13 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 17 C 0.00 0.01 7.25 -7.54 -0.05 -0.05 16 18 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 19 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 20 H 0.07 0.73 7.93 -51.93 -0.41 0.31 16 21 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 23 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 24 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 25 H 0.04 0.60 7.30 -51.93 -0.38 0.22 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.07 0.78 7.42 -51.93 -0.39 0.39 16 34 H 0.08 1.01 8.12 -51.93 -0.42 0.58 16 LS Contribution 278.53 15.07 4.20 4.20 Total: -1.00 -30.81 278.53 -8.82 -39.63 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -6.20 Total: -5.41 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -1.03 Total: -20.53 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.77 Total: -35.00 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.81 -8.82 -39.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698502870.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.014 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds