Wall clock time and date at job start Mon Mar 30 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 115.55225 * 2 1 4 4 C 1.53073 * 117.49508 * 214.27441 * 2 1 3 5 5 C 1.53002 * 59.98504 * 252.51391 * 4 2 1 6 6 C 1.52997 * 117.49807 * 252.49772 * 5 4 2 7 7 N 1.46896 * 117.49669 * 107.49908 * 5 4 2 8 8 C 1.46901 * 110.99901 * 111.25717 * 7 5 4 9 9 C 1.53003 * 109.46813 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46829 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00235 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00229 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99747 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00368 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47185 * 59.99775 * 14 12 10 16 16 H 1.48494 * 109.47355 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46989 * 299.99946 * 14 12 10 18 18 H 1.08992 * 109.47381 * 274.32663 * 1 2 3 19 19 H 1.09001 * 109.46746 * 34.32966 * 1 2 3 20 20 H 1.08999 * 109.47377 * 154.32542 * 1 2 3 21 21 H 1.09001 * 109.47757 * 205.66993 * 3 2 1 22 22 H 1.08998 * 109.47444 * 325.67235 * 3 2 1 23 23 H 1.09000 * 109.46901 * 85.67075 * 3 2 1 24 24 H 1.09003 * 117.51703 * 145.03769 * 4 2 1 25 25 H 1.09002 * 117.49418 * 359.97438 * 4 2 1 26 26 H 1.09002 * 109.47153 * 248.74407 * 6 5 4 27 27 H 1.09001 * 109.46832 * 128.74598 * 6 5 4 28 28 H 1.09004 * 109.47261 * 8.74579 * 6 5 4 29 29 H 1.00898 * 110.99780 * 235.20909 * 7 5 4 30 30 H 1.08998 * 109.47015 * 299.99315 * 8 7 5 31 31 H 1.09001 * 109.47254 * 59.99665 * 8 7 5 32 32 H 1.08998 * 109.47015 * 299.99614 * 9 8 7 33 33 H 1.09001 * 109.47240 * 59.99955 * 9 8 7 34 34 H 0.97005 * 119.99840 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2367 -1.1220 -0.7647 5 6 2.2365 -1.1208 0.7653 6 6 3.5490 -0.7755 1.4717 7 7 1.3938 -2.1142 1.4443 8 6 2.2152 -3.1212 2.1293 9 6 1.3043 -4.1357 2.8236 10 6 2.1470 -5.1691 3.5258 11 1 3.2244 -5.1086 3.4811 12 6 1.5425 -6.1925 4.2246 13 7 0.2306 -6.2666 4.2787 14 14 2.5870 -7.4730 5.0957 15 1 3.4460 -6.8065 6.1072 16 1 1.7030 -8.4578 5.7694 17 1 3.4423 -8.1724 4.1035 18 1 -0.3634 0.0775 1.0246 19 1 -0.3633 0.8487 -0.5796 20 1 -0.3634 -0.9262 -0.4452 21 1 3.1823 1.3087 -0.4452 22 1 1.5810 2.0742 -0.5795 23 1 2.2766 1.7416 1.0247 24 1 3.1720 -0.8770 -1.2680 25 1 1.6113 -1.8600 -1.2671 26 1 3.9375 -1.6633 1.9707 27 1 3.3698 0.0067 2.2093 28 1 4.2748 -0.4240 0.7383 29 1 0.7567 -1.6688 2.0875 30 1 2.8429 -3.6346 1.4010 31 1 2.8458 -2.6319 2.8717 32 1 0.6770 -3.6220 3.5519 33 1 0.6735 -4.6251 2.0815 34 1 -0.1947 -6.9864 4.7707 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702004367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:11 Heat of formation + Delta-G solvation = 4.408374 kcal Electronic energy + Delta-G solvation = -12613.625555 eV Core-core repulsion = 10546.467321 eV Total energy + Delta-G solvation = -2067.158234 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.02304 -34.63512 -32.54717 -29.92898 -28.52307 -27.63961 -26.54020 -24.05848 -20.92677 -19.78005 -18.04572 -16.25917 -15.33282 -14.73859 -14.38723 -14.26156 -13.69534 -12.95969 -12.93647 -12.57129 -12.19572 -12.03411 -11.93075 -11.84523 -11.43438 -11.08158 -10.93929 -10.88203 -10.55432 -10.04122 -9.70857 -9.36065 -9.22301 -8.98452 -8.33015 -7.72950 -5.97843 -4.00406 3.34688 3.38907 3.41336 3.90073 4.42053 4.59429 4.89670 4.96790 5.21794 5.33130 5.37987 5.62197 5.69236 5.87479 5.90104 5.98835 5.99504 6.05867 6.11887 6.18291 6.26575 6.31329 6.48148 6.56626 6.57351 7.03230 7.56640 7.75700 7.87101 8.00945 8.11283 8.45989 9.06665 9.63165 11.13623 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067809 B = 0.006725 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.827463 B = 4162.279656 C = 4395.173956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.129 4.129 3 C -0.111 4.111 4 C -0.156 4.156 5 C 0.047 3.953 6 C -0.145 4.145 7 N -0.653 5.653 8 C 0.066 3.934 9 C 0.025 3.975 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 H 0.055 0.945 19 H 0.051 0.949 20 H 0.064 0.936 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.336 0.664 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.013 0.987 33 H 0.024 0.976 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 12.625 -7.241 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.129 4.129 3 C -0.169 4.169 4 C -0.194 4.194 5 C -0.045 4.045 6 C -0.204 4.204 7 N -0.283 5.283 8 C -0.061 4.061 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 H 0.074 0.926 19 H 0.070 0.930 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.032 12.115 -7.715 14.679 hybrid contribution 0.868 -0.322 1.273 1.574 sum 3.900 11.793 -6.441 13.992 Atomic orbital electron populations 1.21187 0.91900 1.01707 1.01566 1.21742 0.95116 0.90655 1.05425 1.21324 0.99733 0.94378 1.01444 1.23391 1.01444 1.00414 0.94193 1.21645 0.94314 0.95416 0.93121 1.21829 0.96047 1.02101 1.00420 1.60496 1.18847 1.13520 1.35408 1.22213 0.96082 0.92466 0.95384 1.19074 0.94653 0.92593 0.94929 1.21138 0.92954 1.10067 1.31862 0.92831 1.25001 0.94909 0.97888 0.96542 1.69968 1.08378 1.32721 1.42241 0.86646 0.80145 0.81311 0.79815 1.20305 1.21263 1.20220 0.92578 0.93044 0.91696 0.92711 0.92480 0.92569 0.89571 0.88496 0.90807 0.92695 0.92562 0.84470 0.92356 0.96017 0.96874 0.95741 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.16 37.16 0.34 -1.01 16 2 C -0.13 -1.68 2.70 -154.47 -0.42 -2.10 16 3 C -0.11 -1.20 8.88 37.16 0.33 -0.87 16 4 C -0.16 -2.21 9.40 -26.69 -0.25 -2.46 16 5 C 0.05 0.74 2.77 -131.60 -0.36 0.37 16 6 C -0.15 -2.08 8.51 37.16 0.32 -1.76 16 7 N -0.65 -12.13 6.17 -99.96 -0.62 -12.74 16 8 C 0.07 1.44 4.64 -3.82 -0.02 1.42 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 10 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 14 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H 0.06 0.72 7.94 -51.93 -0.41 0.30 16 19 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 20 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 21 H 0.05 0.56 7.77 -51.93 -0.40 0.15 16 22 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 23 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 24 H 0.09 1.08 7.96 -51.93 -0.41 0.67 16 25 H 0.10 1.46 8.05 -51.93 -0.42 1.04 16 26 H 0.07 1.17 5.61 -51.93 -0.29 0.88 16 27 H 0.05 0.74 8.02 -51.93 -0.42 0.32 16 28 H 0.06 0.70 7.77 -51.93 -0.40 0.30 16 29 H 0.34 6.12 8.39 -39.29 -0.33 5.79 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.02 0.46 6.35 -51.93 -0.33 0.13 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 276.27 15.07 4.16 4.16 Total: -1.00 -29.86 276.27 -7.24 -37.09 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.88 Total: 0.79 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.62 Total: -19.65 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.12 Total: -39.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.86 -7.24 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702004367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.501 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds