Wall clock time and date at job start Mon Mar 30 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52998 * 115.56568 * 2 1 4 4 C 1.53000 * 117.50008 * 214.31049 * 2 1 3 5 5 C 1.52997 * 60.00347 * 252.51154 * 4 2 1 6 6 C 1.52998 * 117.51857 * 107.47572 * 5 4 2 7 7 N 1.46900 * 117.49821 * 252.51101 * 5 4 2 8 8 C 1.46903 * 110.99892 * 248.61642 * 7 5 4 9 9 C 1.52998 * 109.46731 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.46767 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00166 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99918 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00454 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47091 * 59.99850 * 14 12 10 16 16 H 1.48501 * 109.47179 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46915 * 300.00051 * 14 12 10 18 18 H 1.09002 * 109.47378 * 274.30968 * 1 2 3 19 19 H 1.09004 * 109.47432 * 34.31274 * 1 2 3 20 20 H 1.09003 * 109.47662 * 154.31268 * 1 2 3 21 21 H 1.09000 * 109.47691 * 205.68877 * 3 2 1 22 22 H 1.09000 * 109.46743 * 325.69107 * 3 2 1 23 23 H 1.08997 * 109.47164 * 85.68480 * 3 2 1 24 24 H 1.09002 * 117.49696 * 0.02562 * 4 2 1 25 25 H 1.09002 * 117.50343 * 145.02258 * 4 2 1 26 26 H 1.08996 * 109.47413 * 351.37793 * 6 5 4 27 27 H 1.09004 * 109.46810 * 111.37649 * 6 5 4 28 28 H 1.08996 * 109.47194 * 231.36944 * 6 5 4 29 29 H 1.00901 * 111.00205 * 124.66457 * 7 5 4 30 30 H 1.08992 * 109.47164 * 299.99918 * 8 7 5 31 31 H 1.09006 * 109.46828 * 60.00392 * 8 7 5 32 32 H 1.09000 * 109.47694 * 300.00076 * 9 8 7 33 33 H 1.08999 * 109.47485 * 60.00175 * 9 8 7 34 34 H 0.96998 * 120.00193 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 6 1.3587 -2.1559 1.4718 7 7 3.4966 -0.7898 1.4433 8 6 4.0496 -1.9649 2.1298 9 6 5.3590 -1.5815 2.8223 10 6 5.9267 -2.7871 3.5260 11 1 5.4059 -3.7322 3.4833 12 6 7.1114 -2.6838 4.2236 13 7 7.7460 -1.5330 4.2752 14 14 7.8155 -4.1784 5.0954 15 1 8.0755 -5.2529 4.1040 16 1 9.0863 -3.8063 5.7676 17 1 6.8440 -4.6638 6.1082 18 1 -0.3634 0.0772 1.0248 19 1 -0.3634 0.8488 -0.5793 20 1 -0.3634 -0.9261 -0.4454 21 1 3.1824 1.3084 -0.4455 22 1 1.5811 2.0742 -0.5793 23 1 2.2772 1.7413 1.0247 24 1 1.6111 -1.8582 -1.2686 25 1 3.1715 -0.8752 -1.2683 26 1 0.7291 -2.6599 0.7387 27 1 1.9921 -2.8887 1.9719 28 1 0.7298 -1.6563 2.2087 29 1 3.3706 -0.0218 2.0855 30 1 3.3360 -2.3209 2.8727 31 1 4.2411 -2.7539 1.4025 32 1 6.0725 -1.2257 2.0790 33 1 5.1680 -0.7923 3.5494 34 1 8.5797 -1.4604 4.7657 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702004370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:12 Heat of formation + Delta-G solvation = 4.416580 kcal Electronic energy + Delta-G solvation = -12613.736826 eV Core-core repulsion = 10546.578947 eV Total energy + Delta-G solvation = -2067.157878 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.02708 -34.63661 -32.54749 -29.92840 -28.52396 -27.63998 -26.54160 -24.05896 -20.92638 -19.77984 -18.04649 -16.25980 -15.33369 -14.73962 -14.38771 -14.26075 -13.69529 -12.96060 -12.93705 -12.57063 -12.19597 -12.03447 -11.93070 -11.84535 -11.43321 -11.08192 -10.93898 -10.88214 -10.55440 -10.04131 -9.70990 -9.36043 -9.22361 -8.98471 -8.33006 -7.72929 -5.97806 -4.00414 3.34701 3.38899 3.41351 3.90156 4.42036 4.59393 4.89708 4.96844 5.21814 5.33130 5.37997 5.62181 5.69202 5.87459 5.90074 5.98817 5.99543 6.05890 6.11865 6.18302 6.26573 6.31297 6.48090 6.56646 6.57322 7.03263 7.56656 7.75710 7.87111 8.00933 8.11301 8.45995 9.06693 9.63186 11.13652 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067817 B = 0.006725 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.776201 B = 4162.326725 C = 4395.347021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.129 4.129 3 C -0.106 4.106 4 C -0.156 4.156 5 C 0.047 3.953 6 C -0.145 4.145 7 N -0.653 5.653 8 C 0.066 3.934 9 C 0.025 3.975 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 H 0.055 0.945 19 H 0.056 0.944 20 H 0.054 0.946 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.336 0.664 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.024 0.976 33 H 0.013 0.987 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.809 2.491 -7.235 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.129 4.129 3 C -0.164 4.164 4 C -0.194 4.194 5 C -0.045 4.045 6 C -0.204 4.204 7 N -0.283 5.283 8 C -0.061 4.061 9 C -0.013 4.013 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 H 0.074 0.926 19 H 0.075 0.925 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.241 2.494 -7.709 14.680 hybrid contribution -0.085 -0.920 1.273 1.573 sum -12.326 1.574 -6.436 13.994 Atomic orbital electron populations 1.21324 0.92674 1.01438 1.01444 1.21730 0.93892 0.91893 1.05432 1.21188 1.00283 0.93324 1.01567 1.23378 1.01776 1.00101 0.94183 1.21644 0.91752 0.97975 0.93123 1.21827 0.99248 0.98901 1.00418 1.60497 1.22569 1.09757 1.35447 1.22213 0.97414 0.91149 0.95370 1.19074 0.90626 0.96608 0.94942 1.21137 1.06826 0.96202 1.31856 0.92829 1.25000 0.96911 0.95883 0.96539 1.69964 1.16942 1.24101 1.42305 0.86648 0.78319 0.83141 0.79820 1.20220 1.21261 1.20304 0.92570 0.92480 0.92711 0.91694 0.93044 0.92579 0.89576 0.88499 0.92562 0.90804 0.92694 0.84469 0.96011 0.92359 0.95739 0.96875 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 8.88 37.15 0.33 -0.87 16 2 C -0.13 -1.68 2.70 -154.51 -0.42 -2.10 16 3 C -0.11 -1.35 9.16 37.16 0.34 -1.01 16 4 C -0.16 -2.21 9.39 -26.73 -0.25 -2.46 16 5 C 0.05 0.74 2.77 -131.60 -0.37 0.37 16 6 C -0.15 -2.08 8.51 37.16 0.32 -1.76 16 7 N -0.65 -12.13 6.17 -99.96 -0.62 -12.74 16 8 C 0.07 1.44 4.64 -3.82 -0.02 1.42 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 10 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 14 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 19 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 20 H 0.05 0.56 7.77 -51.93 -0.40 0.15 16 21 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 22 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 23 H 0.06 0.72 7.93 -51.93 -0.41 0.30 16 24 H 0.09 1.08 7.96 -51.93 -0.41 0.67 16 25 H 0.10 1.46 8.05 -51.93 -0.42 1.04 16 26 H 0.06 0.70 7.78 -51.93 -0.40 0.30 16 27 H 0.07 1.17 5.60 -51.93 -0.29 0.88 16 28 H 0.05 0.74 8.02 -51.93 -0.42 0.32 16 29 H 0.34 6.12 8.38 -39.29 -0.33 5.79 16 30 H 0.02 0.46 6.35 -51.93 -0.33 0.13 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 276.25 15.07 4.16 4.16 Total: -1.00 -29.86 276.25 -7.24 -37.09 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.88 Total: 0.79 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -0.62 Total: -19.64 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.12 Total: -39.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.86 -7.24 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702004370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.509 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds