Wall clock time and date at job start Mon Mar 30 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52998 * 115.56568 * 2 1 4 4 C 1.53000 * 117.50008 * 214.31049 * 2 1 3 5 5 C 1.52997 * 60.00347 * 252.51154 * 4 2 1 6 6 C 1.52998 * 117.51857 * 107.47572 * 5 4 2 7 7 N 1.46900 * 117.49821 * 252.51101 * 5 4 2 8 8 C 1.46903 * 110.99892 * 248.61642 * 7 5 4 9 9 C 1.52998 * 109.46731 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.46767 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00166 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99918 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00454 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47091 * 59.99850 * 14 12 10 16 16 H 1.48501 * 109.47179 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46915 * 300.00051 * 14 12 10 18 18 H 1.09002 * 109.47378 * 274.30968 * 1 2 3 19 19 H 1.09004 * 109.47432 * 34.31274 * 1 2 3 20 20 H 1.09003 * 109.47662 * 154.31268 * 1 2 3 21 21 H 1.09000 * 109.47691 * 205.68877 * 3 2 1 22 22 H 1.09000 * 109.46743 * 325.69107 * 3 2 1 23 23 H 1.08997 * 109.47164 * 85.68480 * 3 2 1 24 24 H 1.09002 * 117.49696 * 0.02562 * 4 2 1 25 25 H 1.09002 * 117.50343 * 145.02258 * 4 2 1 26 26 H 1.08996 * 109.47413 * 351.37793 * 6 5 4 27 27 H 1.09004 * 109.46810 * 111.37649 * 6 5 4 28 28 H 1.08996 * 109.47194 * 231.36944 * 6 5 4 29 29 H 1.00901 * 111.00205 * 124.66457 * 7 5 4 30 30 H 1.08992 * 109.47164 * 299.99918 * 8 7 5 31 31 H 1.09006 * 109.46828 * 60.00392 * 8 7 5 32 32 H 1.09000 * 109.47694 * 300.00076 * 9 8 7 33 33 H 1.08999 * 109.47485 * 60.00175 * 9 8 7 34 34 H 0.96998 * 120.00193 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 6 1.3587 -2.1559 1.4718 7 7 3.4966 -0.7898 1.4433 8 6 4.0496 -1.9649 2.1298 9 6 5.3590 -1.5815 2.8223 10 6 5.9267 -2.7871 3.5260 11 1 5.4059 -3.7322 3.4833 12 6 7.1114 -2.6838 4.2236 13 7 7.7460 -1.5330 4.2752 14 14 7.8155 -4.1784 5.0954 15 1 8.0755 -5.2529 4.1040 16 1 9.0863 -3.8063 5.7676 17 1 6.8440 -4.6638 6.1082 18 1 -0.3634 0.0772 1.0248 19 1 -0.3634 0.8488 -0.5793 20 1 -0.3634 -0.9261 -0.4454 21 1 3.1824 1.3084 -0.4455 22 1 1.5811 2.0742 -0.5793 23 1 2.2772 1.7413 1.0247 24 1 1.6111 -1.8582 -1.2686 25 1 3.1715 -0.8752 -1.2683 26 1 0.7291 -2.6599 0.7387 27 1 1.9921 -2.8887 1.9719 28 1 0.7298 -1.6563 2.2087 29 1 3.3706 -0.0218 2.0855 30 1 3.3360 -2.3209 2.8727 31 1 4.2411 -2.7539 1.4025 32 1 6.0725 -1.2257 2.0790 33 1 5.1680 -0.7923 3.5494 34 1 8.5797 -1.4604 4.7657 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702004370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:12 Heat of formation + Delta-G solvation = -14.239893 kcal Electronic energy + Delta-G solvation = -12614.545831 eV Core-core repulsion = 10546.578947 eV Total energy + Delta-G solvation = -2067.966884 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.20992 -36.38764 -34.53483 -31.40418 -30.03143 -28.77739 -27.60893 -26.06311 -22.72463 -21.10448 -19.30650 -18.39168 -16.77615 -16.32736 -16.12823 -15.60673 -14.83328 -14.57176 -14.13886 -14.00614 -13.71303 -13.48234 -13.05435 -12.96145 -12.85176 -12.76453 -12.52398 -12.42865 -12.08547 -11.83466 -11.43530 -11.35044 -10.78461 -10.56610 -10.23536 -9.20469 -8.21141 -6.33176 1.39605 1.43256 1.51248 2.39826 2.78538 3.12042 3.20480 3.80858 3.91237 4.16124 4.25512 4.44600 4.50222 4.67252 4.77620 4.83248 4.88740 4.93323 4.99514 5.06885 5.11445 5.14230 5.15774 5.25870 5.35987 5.44346 5.57111 5.66137 5.78925 6.14984 6.33578 6.54383 6.83769 7.36216 8.90980 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067817 B = 0.006725 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.776201 B = 4162.326725 C = 4395.347021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.111 4.111 3 C -0.109 4.109 4 C -0.158 4.158 5 C 0.019 3.981 6 C -0.139 4.139 7 N -0.660 5.660 8 C 0.089 3.911 9 C 0.032 3.968 10 C -0.546 4.546 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.266 1.266 18 H 0.059 0.941 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.047 0.953 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.336 0.664 30 H 0.027 0.973 31 H 0.051 0.949 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 1.668 -7.501 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.166 4.166 4 C -0.195 4.195 5 C -0.072 4.072 6 C -0.197 4.197 7 N -0.290 5.290 8 C -0.039 4.039 9 C -0.006 4.006 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.190 1.190 18 H 0.078 0.922 19 H 0.092 0.908 20 H 0.083 0.917 21 H 0.066 0.934 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.124 0.876 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.794 1.671 -7.991 16.029 hybrid contribution 0.382 -0.590 1.306 1.483 sum -13.412 1.081 -6.685 15.025 Atomic orbital electron populations 1.21355 0.90314 1.02806 1.02164 1.21876 0.95448 0.91154 1.02663 1.21219 0.99885 0.93866 1.01605 1.23437 1.01784 1.01282 0.93043 1.21841 0.91176 1.00527 0.93700 1.21761 0.98962 0.98114 1.00902 1.60361 1.25195 1.08502 1.34936 1.21771 0.95184 0.91961 0.95021 1.18927 0.92433 0.95452 0.93742 1.21573 1.07511 0.97019 1.32340 0.92159 1.25995 0.97237 0.99266 0.97224 1.70106 1.17440 1.26562 1.43126 0.85456 0.77634 0.78949 0.78728 1.19167 1.20692 1.19034 0.92202 0.90792 0.91685 0.93423 0.90664 0.92965 0.87575 0.90042 0.90393 0.92868 0.91902 0.84553 0.95469 0.93016 0.99058 0.99110 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 8.88 71.98 0.64 -1.34 16 2 C -0.11 -2.67 2.70 -52.18 -0.14 -2.81 16 3 C -0.11 -2.60 9.16 71.98 0.66 -1.94 16 4 C -0.16 -4.20 9.39 30.59 0.29 -3.91 16 5 C 0.02 0.58 2.77 3.53 0.01 0.59 16 6 C -0.14 -3.73 8.51 71.98 0.61 -3.12 16 7 N -0.66 -24.86 6.17 -470.18 -2.90 -27.76 16 8 C 0.09 3.93 4.64 86.30 0.40 4.33 16 9 C 0.03 1.76 5.23 29.85 0.16 1.92 16 10 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 11 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 12 C 0.00 0.04 5.46 84.65 0.46 0.51 16 13 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 14 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 15 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H 0.06 1.07 8.02 -2.39 -0.02 1.05 16 19 H 0.07 1.12 7.92 -2.38 -0.02 1.10 16 20 H 0.06 1.06 7.77 -2.39 -0.02 1.04 16 21 H 0.05 1.29 7.90 -2.39 -0.02 1.27 16 22 H 0.07 1.44 7.92 -2.39 -0.02 1.42 16 23 H 0.05 1.29 7.93 -2.39 -0.02 1.27 16 24 H 0.11 2.38 7.96 -2.39 -0.02 2.36 16 25 H 0.08 2.42 8.05 -2.39 -0.02 2.40 16 26 H 0.08 1.73 7.78 -2.39 -0.02 1.71 16 27 H 0.05 1.64 5.60 -2.38 -0.01 1.62 16 28 H 0.06 1.56 8.02 -2.39 -0.02 1.54 16 29 H 0.34 12.48 8.38 -89.69 -0.75 11.73 16 30 H 0.03 1.17 6.35 -2.39 -0.02 1.15 16 31 H 0.05 2.32 8.14 -2.38 -0.02 2.31 16 32 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -64.49 276.25 3.03 -61.47 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.30 Total: 14.61 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.32 Total: -37.50 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -2.62 Total: -85.46 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.49 3.03 -61.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702004370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.225 kcal (2) G-P(sol) polarization free energy of solvation -64.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds