Wall clock time and date at job start Mon Mar 30 2020 01:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47242 * 2 1 4 4 C 1.53517 * 114.17264 * 174.99755 * 3 2 1 5 5 N 1.47476 * 87.93063 * 139.67255 * 4 3 2 6 6 C 1.46901 * 110.99859 * 221.29895 * 5 4 3 7 7 H 1.09000 * 109.47283 * 55.00091 * 6 5 4 8 8 C 1.52997 * 109.47202 * 294.99879 * 6 5 4 9 9 C 1.53006 * 109.47113 * 175.00418 * 6 5 4 10 10 C 1.50699 * 109.46866 * 294.99912 * 9 6 5 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 6 12 12 C 1.37874 * 120.00270 * 180.02562 * 10 9 6 13 13 N 1.31522 * 119.99834 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00496 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47574 * 89.99780 * 14 12 10 16 16 H 1.48500 * 109.47346 * 209.99892 * 14 12 10 17 17 H 1.48499 * 109.47067 * 329.99541 * 14 12 10 18 18 C 1.47474 * 87.83857 * 332.99309 * 5 4 3 19 19 H 1.09000 * 109.46774 * 59.99601 * 1 2 3 20 20 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47000 * 299.99719 * 1 2 3 22 22 H 1.09005 * 109.47122 * 240.00191 * 2 1 3 23 23 H 1.09003 * 109.47182 * 120.00091 * 2 1 3 24 24 H 1.09007 * 113.25710 * 42.04965 * 3 2 1 25 25 H 1.09003 * 113.47069 * 24.90611 * 4 3 2 26 26 H 1.09002 * 113.53258 * 254.45170 * 4 3 2 27 27 H 1.09004 * 109.47394 * 179.97438 * 8 6 5 28 28 H 1.08990 * 109.47621 * 300.00434 * 8 6 5 29 29 H 1.09002 * 109.46731 * 60.00156 * 8 6 5 30 30 H 1.08993 * 109.46955 * 55.00131 * 9 6 5 31 31 H 1.09000 * 109.47050 * 174.99959 * 9 6 5 32 32 H 0.96992 * 120.00032 * 180.02562 * 13 12 10 33 33 H 1.08996 * 113.47773 * 141.77921 * 18 5 4 34 34 H 1.09004 * 113.47463 * 272.24202 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5650 1.5700 0.1221 5 7 3.5001 2.6570 -0.8724 6 6 4.6034 2.5546 -1.8369 7 1 4.5951 1.5654 -2.2947 8 6 5.9344 2.7711 -1.1143 9 6 4.4329 3.6201 -2.9217 10 6 3.1830 3.3350 -3.7139 11 1 2.5716 2.4792 -3.4684 12 6 2.8205 4.1660 -4.7526 13 7 3.5653 5.2079 -5.0518 14 14 1.2709 3.8130 -5.7340 15 1 0.1180 4.5066 -5.1054 16 1 1.4440 4.3021 -7.1254 17 1 1.0186 2.3497 -5.7516 18 6 2.2763 2.0257 -1.4002 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.4824 2.0961 0.6708 25 1 4.1039 0.6905 -0.2304 26 1 3.8966 1.9010 1.1063 27 1 6.7531 2.6947 -1.8299 28 1 5.9427 3.7602 -0.6565 29 1 6.0558 2.0121 -0.3414 30 1 4.3522 4.6025 -2.4566 31 1 5.2964 3.6029 -3.5867 32 1 3.3101 5.7927 -5.7823 33 1 1.5148 2.7430 -1.7059 34 1 2.4713 1.2678 -2.1590 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705079101.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:22 Heat of formation + Delta-G solvation = -3.690886 kcal Electronic energy + Delta-G solvation = -13049.559631 eV Core-core repulsion = 10982.050186 eV Total energy + Delta-G solvation = -2067.509444 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.24378 -36.22968 -34.50480 -32.89964 -29.68418 -27.68265 -26.26826 -25.15437 -23.35728 -20.89829 -20.49999 -18.34739 -16.98243 -16.63552 -16.11159 -15.56561 -15.05361 -14.53247 -14.24352 -13.81713 -13.50852 -13.21082 -13.17678 -12.99094 -12.77633 -12.64029 -12.33463 -12.30411 -12.12785 -11.70042 -11.43616 -11.10301 -10.94230 -10.65022 -10.51603 -9.56248 -8.16011 -6.23502 1.37521 1.38988 1.48807 2.41338 3.15409 3.32297 3.54733 3.91126 4.25724 4.27117 4.39227 4.46365 4.53369 4.61186 4.65768 4.67838 4.86930 4.92069 5.02119 5.07785 5.16272 5.19234 5.22131 5.28319 5.40714 5.52064 5.55028 5.62557 5.69161 5.88154 6.27835 6.45708 6.90253 7.43390 8.96838 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028189 B = 0.012334 C = 0.008916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.043268 B = 2269.644640 C = 3139.561832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.108 4.108 4 C 0.004 3.996 5 N -0.482 5.482 6 C 0.058 3.942 7 H 0.031 0.969 8 C -0.133 4.133 9 C 0.036 3.964 10 C -0.527 4.527 11 H 0.075 0.925 12 C -0.004 4.004 13 N -0.938 5.938 14 Si 0.956 3.044 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.261 1.261 18 C 0.024 3.976 19 H 0.042 0.958 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.070 0.930 30 H -0.012 1.012 31 H -0.009 1.009 32 H 0.260 0.740 33 H 0.055 0.945 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.303 -10.732 10.280 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.127 4.127 4 C -0.125 4.125 5 N -0.205 5.205 6 C -0.050 4.050 7 H 0.049 0.951 8 C -0.191 4.191 9 C -0.001 4.001 10 C -0.565 4.565 11 H 0.093 0.907 12 C -0.201 4.201 13 N -0.580 5.580 14 Si 0.781 3.219 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.185 1.185 18 C -0.105 4.105 19 H 0.061 0.939 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.100 0.900 24 H 0.118 0.882 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.238 -9.875 10.341 14.661 hybrid contribution -0.363 -0.250 -1.398 1.465 sum -3.601 -10.125 8.944 13.981 Atomic orbital electron populations 1.21739 0.95162 1.02032 1.01718 1.21444 0.96564 0.94184 1.02319 1.22870 0.95691 0.97741 0.96409 1.23843 0.96537 0.93962 0.98146 1.68848 1.03273 1.38084 1.10259 1.22121 0.92265 0.97414 0.93233 0.95137 1.21740 0.95470 1.01785 1.00068 1.18965 0.95409 0.93486 0.92235 1.21912 1.09186 1.11144 1.14265 0.90685 1.25940 1.00240 0.95102 0.98787 1.70121 1.40388 1.16623 1.30839 0.85572 0.79639 0.78973 0.77683 1.20061 1.21077 1.18457 1.23696 0.94060 0.96672 0.96081 0.93926 0.91631 0.92022 0.92654 0.90007 0.88217 0.91297 0.89267 0.92498 0.93245 0.91157 0.99345 0.99099 0.93157 0.92617 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.90 71.98 0.71 -2.30 16 2 C -0.11 -2.36 5.84 30.59 0.18 -2.19 16 3 C -0.11 -3.02 3.99 -10.45 -0.04 -3.06 16 4 C 0.00 0.11 6.15 83.57 0.51 0.63 16 5 N -0.48 -19.16 6.13 -902.47 -5.53 -24.69 16 6 C 0.06 2.52 1.94 44.92 0.09 2.60 16 7 H 0.03 1.32 7.56 -2.39 -0.02 1.30 16 8 C -0.13 -4.74 9.18 71.98 0.66 -4.08 16 9 C 0.04 2.00 4.65 29.85 0.14 2.14 16 10 C -0.53 -30.18 8.07 25.60 0.21 -29.97 16 11 H 0.08 4.04 4.57 -2.91 -0.01 4.03 16 12 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 13 N -0.94 -58.96 13.29 21.45 0.28 -58.68 16 14 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 15 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 16 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 18 C 0.02 0.91 4.81 83.57 0.40 1.31 16 19 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 22 H 0.05 1.30 7.81 -2.38 -0.02 1.28 16 23 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.10 2.70 8.12 -2.38 -0.02 2.68 16 25 H 0.07 1.89 7.80 -2.39 -0.02 1.88 16 26 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 2.05 7.34 -2.39 -0.02 2.03 16 30 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 33 H 0.06 2.38 7.78 -2.39 -0.02 2.36 16 34 H 0.06 2.24 6.31 -2.38 -0.02 2.23 16 Total: -1.00 -65.62 269.13 1.14 -64.49 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.04 Total: 6.27 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.32 Total: -34.69 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -5.24 Total: -83.37 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.62 1.14 -64.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705079101.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.795 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds