Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47591 * 2 1 4 4 C 1.53506 * 114.17339 * 174.99584 * 3 2 1 5 5 N 1.47483 * 87.99706 * 139.70736 * 4 3 2 6 6 C 1.46898 * 110.99752 * 221.27021 * 5 4 3 7 7 H 1.08997 * 109.47215 * 301.39891 * 6 5 4 8 8 C 1.53001 * 109.47505 * 61.40207 * 6 5 4 9 9 C 1.53005 * 109.46956 * 181.40323 * 6 5 4 10 10 C 1.50691 * 109.47332 * 64.99650 * 9 6 5 11 11 H 1.07997 * 120.00169 * 0.02562 * 10 9 6 12 12 C 1.37879 * 120.00038 * 180.02562 * 10 9 6 13 13 N 1.31510 * 119.99932 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47493 * 89.99641 * 14 12 10 16 16 H 1.48503 * 109.47204 * 209.99572 * 14 12 10 17 17 H 1.48498 * 109.47132 * 329.99599 * 14 12 10 18 18 C 1.47482 * 87.83257 * 332.96011 * 5 4 3 19 19 H 1.08993 * 109.47098 * 300.00210 * 1 2 3 20 20 H 1.09004 * 109.46827 * 60.00204 * 1 2 3 21 21 H 1.09000 * 109.46725 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47566 * 239.99833 * 2 1 3 23 23 H 1.09007 * 109.47017 * 120.00299 * 2 1 3 24 24 H 1.09008 * 113.37491 * 41.92085 * 3 2 1 25 25 H 1.08997 * 113.47995 * 24.90741 * 4 3 2 26 26 H 1.09009 * 113.47656 * 254.50066 * 4 3 2 27 27 H 1.09001 * 109.46971 * 309.91898 * 8 6 5 28 28 H 1.08996 * 109.47227 * 69.91375 * 8 6 5 29 29 H 1.08997 * 109.47384 * 189.92074 * 8 6 5 30 30 H 1.09002 * 109.47163 * 185.00275 * 9 6 5 31 31 H 1.09004 * 109.46812 * 304.99371 * 9 6 5 32 32 H 0.97005 * 120.00262 * 180.02562 * 13 12 10 33 33 H 1.09002 * 113.47615 * 141.77533 * 18 5 4 34 34 H 1.09001 * 113.47714 * 272.18440 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5650 1.5699 0.1222 5 7 3.5017 2.6578 -0.8716 6 6 4.6060 2.5555 -1.8350 7 1 5.5567 2.5953 -1.3035 8 6 4.5005 1.2308 -2.5931 9 6 4.5271 3.7182 -2.8265 10 6 4.7537 5.0170 -2.0967 11 1 4.9361 5.0136 -1.0323 12 6 4.7280 6.2098 -2.7879 13 7 4.5063 6.2139 -4.0842 14 14 5.0096 7.8197 -1.8833 15 1 6.4600 8.1387 -1.8802 16 1 4.2649 8.9080 -2.5662 17 1 4.5278 7.6923 -0.4845 18 6 2.2782 2.0273 -1.4013 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.4824 2.0984 0.6685 25 1 4.1039 0.6906 -0.2303 26 1 3.8956 1.9002 1.1070 27 1 4.3794 0.4138 -1.8818 28 1 3.6394 1.2618 -3.2607 29 1 5.4073 1.0729 -3.1768 30 1 5.2916 3.5942 -3.5935 31 1 3.5424 3.7310 -3.2938 32 1 4.4887 7.0530 -4.5706 33 1 1.5173 2.7452 -1.7073 34 1 2.4737 1.2706 -2.1611 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705079104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = 24.516610 kcal Electronic energy + Delta-G solvation = -12941.105427 eV Core-core repulsion = 10874.819152 eV Total energy + Delta-G solvation = -2066.286276 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11981 -34.59017 -32.70973 -31.25185 -27.36482 -26.47299 -25.50153 -23.30197 -22.08100 -19.59782 -18.44531 -16.17356 -15.50078 -15.32190 -14.55309 -14.29235 -13.64514 -13.08261 -12.96270 -12.66139 -11.95719 -11.83306 -11.55872 -11.38779 -11.08802 -11.05918 -10.64341 -10.54931 -10.48958 -10.20348 -9.87939 -9.69882 -9.15855 -8.97418 -8.23773 -7.90665 -5.85760 -3.83621 3.41179 3.46871 3.52842 4.58871 4.67299 4.70416 4.98736 5.30144 5.44222 5.50513 5.57541 5.61913 5.68066 5.79014 5.91863 5.93635 6.00505 6.06914 6.11762 6.17917 6.27568 6.29044 6.47274 6.54048 6.71080 6.96156 7.21299 7.61346 7.83384 8.01693 8.14735 8.61470 9.21921 9.77846 11.26419 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048206 B = 0.008410 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.704520 B = 3328.376076 C = 3522.804974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.119 4.119 4 C -0.011 4.011 5 N -0.439 5.439 6 C 0.049 3.951 7 H 0.069 0.931 8 C -0.183 4.183 9 C 0.036 3.964 10 C -0.491 4.491 11 H 0.059 0.941 12 C 0.050 3.950 13 N -0.905 5.905 14 Si 0.890 3.110 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.274 1.274 18 C -0.006 4.006 19 H 0.053 0.947 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.257 0.743 33 H 0.076 0.924 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.824 -11.848 6.460 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.138 4.138 4 C -0.140 4.140 5 N -0.160 5.160 6 C -0.060 4.060 7 H 0.087 0.913 8 C -0.242 4.242 9 C -0.002 4.002 10 C -0.530 4.530 11 H 0.077 0.923 12 C -0.149 4.149 13 N -0.546 5.546 14 Si 0.719 3.281 15 H -0.210 1.210 16 H -0.215 1.215 17 H -0.199 1.199 18 C -0.135 4.135 19 H 0.072 0.928 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.113 0.887 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.796 -10.991 6.500 13.640 hybrid contribution 0.295 0.181 0.012 0.346 sum -4.501 -10.810 6.512 13.399 Atomic orbital electron populations 1.21737 0.95937 1.01010 1.01979 1.21469 0.95865 0.96139 1.01534 1.22827 0.96184 0.95990 0.98791 1.23923 0.95638 0.95437 0.99025 1.69254 1.02815 1.34695 1.09281 1.22331 0.94319 0.94876 0.94431 0.91311 1.22565 1.01955 0.98900 1.00745 1.19062 0.97111 0.91191 0.92799 1.21176 1.46315 0.90789 0.94694 0.92292 1.25011 0.96030 0.99081 0.94823 1.69967 1.51278 1.26291 1.07016 0.86615 0.77904 0.83611 0.79988 1.20973 1.21504 1.19897 1.24076 0.95501 0.98195 0.95679 0.92834 0.92561 0.93253 0.92194 0.92147 0.88655 0.91817 0.90840 0.93529 0.92286 0.92563 0.96464 0.96550 0.93331 0.90578 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.90 37.16 0.37 -1.15 16 2 C -0.11 -1.27 5.85 -26.73 -0.16 -1.43 16 3 C -0.12 -1.69 4.00 -90.00 -0.36 -2.05 16 4 C -0.01 -0.17 7.11 -7.55 -0.05 -0.23 16 5 N -0.44 -8.84 6.07 -236.36 -1.43 -10.28 16 6 C 0.05 1.05 2.38 -67.71 -0.16 0.88 16 7 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 8 C -0.18 -3.18 7.75 37.16 0.29 -2.89 16 9 C 0.04 0.94 4.56 -27.88 -0.13 0.82 16 10 C -0.49 -14.37 8.84 -34.44 -0.30 -14.67 16 11 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 12 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 13 N -0.90 -28.03 13.29 55.43 0.74 -27.29 16 14 Si 0.89 22.64 29.54 -169.99 -5.02 17.62 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.01 -0.10 6.80 -7.45 -0.05 -0.15 16 19 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.68 7.82 -51.93 -0.41 0.27 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.10 1.37 8.12 -51.92 -0.42 0.95 16 25 H 0.06 0.94 5.84 -51.93 -0.30 0.63 16 26 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 27 H 0.05 0.70 5.81 -51.93 -0.30 0.40 16 28 H 0.06 1.02 6.47 -51.93 -0.34 0.69 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.24 4.61 -51.93 -0.24 1.00 16 LS Contribution 268.85 15.07 4.05 4.05 Total: -1.00 -30.98 268.85 -8.09 -39.07 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.77 Total: -3.68 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.65 Total: -19.49 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.70 Total: -37.57 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.98 -8.09 -39.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705079104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.590 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds