Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47591 * 2 1 4 4 C 1.53506 * 114.17339 * 174.99584 * 3 2 1 5 5 N 1.47483 * 87.99706 * 139.70736 * 4 3 2 6 6 C 1.46898 * 110.99752 * 221.27021 * 5 4 3 7 7 H 1.08997 * 109.47215 * 301.39891 * 6 5 4 8 8 C 1.53001 * 109.47505 * 61.40207 * 6 5 4 9 9 C 1.53005 * 109.46956 * 181.40323 * 6 5 4 10 10 C 1.50691 * 109.47332 * 64.99650 * 9 6 5 11 11 H 1.07997 * 120.00169 * 0.02562 * 10 9 6 12 12 C 1.37879 * 120.00038 * 180.02562 * 10 9 6 13 13 N 1.31510 * 119.99932 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47493 * 89.99641 * 14 12 10 16 16 H 1.48503 * 109.47204 * 209.99572 * 14 12 10 17 17 H 1.48498 * 109.47132 * 329.99599 * 14 12 10 18 18 C 1.47482 * 87.83257 * 332.96011 * 5 4 3 19 19 H 1.08993 * 109.47098 * 300.00210 * 1 2 3 20 20 H 1.09004 * 109.46827 * 60.00204 * 1 2 3 21 21 H 1.09000 * 109.46725 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47566 * 239.99833 * 2 1 3 23 23 H 1.09007 * 109.47017 * 120.00299 * 2 1 3 24 24 H 1.09008 * 113.37491 * 41.92085 * 3 2 1 25 25 H 1.08997 * 113.47995 * 24.90741 * 4 3 2 26 26 H 1.09009 * 113.47656 * 254.50066 * 4 3 2 27 27 H 1.09001 * 109.46971 * 309.91898 * 8 6 5 28 28 H 1.08996 * 109.47227 * 69.91375 * 8 6 5 29 29 H 1.08997 * 109.47384 * 189.92074 * 8 6 5 30 30 H 1.09002 * 109.47163 * 185.00275 * 9 6 5 31 31 H 1.09004 * 109.46812 * 304.99371 * 9 6 5 32 32 H 0.97005 * 120.00262 * 180.02562 * 13 12 10 33 33 H 1.09002 * 113.47615 * 141.77533 * 18 5 4 34 34 H 1.09001 * 113.47714 * 272.18440 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5650 1.5699 0.1222 5 7 3.5017 2.6578 -0.8716 6 6 4.6060 2.5555 -1.8350 7 1 5.5567 2.5953 -1.3035 8 6 4.5005 1.2308 -2.5931 9 6 4.5271 3.7182 -2.8265 10 6 4.7537 5.0170 -2.0967 11 1 4.9361 5.0136 -1.0323 12 6 4.7280 6.2098 -2.7879 13 7 4.5063 6.2139 -4.0842 14 14 5.0096 7.8197 -1.8833 15 1 6.4600 8.1387 -1.8802 16 1 4.2649 8.9080 -2.5662 17 1 4.5278 7.6923 -0.4845 18 6 2.2782 2.0273 -1.4013 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.4824 2.0984 0.6685 25 1 4.1039 0.6906 -0.2303 26 1 3.8956 1.9002 1.1070 27 1 4.3794 0.4138 -1.8818 28 1 3.6394 1.2618 -3.2607 29 1 5.4073 1.0729 -3.1768 30 1 5.2916 3.5942 -3.5935 31 1 3.5424 3.7310 -3.2938 32 1 4.4887 7.0530 -4.5706 33 1 1.5173 2.7452 -1.7073 34 1 2.4737 1.2706 -2.1611 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705079104.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = 3.838097 kcal Electronic energy + Delta-G solvation = -12942.002115 eV Core-core repulsion = 10874.819152 eV Total energy + Delta-G solvation = -2067.182963 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.50739 -36.16856 -34.51392 -32.75880 -29.32457 -27.76510 -26.82760 -25.18223 -23.38551 -20.97974 -19.90617 -18.43501 -16.93862 -16.68790 -16.43483 -15.66992 -14.92925 -14.50400 -14.31397 -14.03583 -13.75388 -13.31950 -13.25521 -12.81616 -12.60845 -12.43306 -12.36641 -12.10579 -11.99905 -11.67511 -11.28384 -11.15484 -11.09638 -10.93122 -10.52155 -9.37861 -8.14346 -6.20395 1.38483 1.40305 1.52063 2.44395 3.16924 3.33828 3.53123 3.87498 4.11779 4.30775 4.34105 4.40403 4.48307 4.55484 4.63403 4.67798 4.81328 4.89279 4.98251 5.04038 5.15734 5.16677 5.20554 5.27912 5.40699 5.42521 5.58436 5.63104 5.77271 5.89549 6.29483 6.51417 6.93203 7.45739 8.97973 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048206 B = 0.008410 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.704520 B = 3328.376076 C = 3522.804974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.099 4.099 4 C -0.006 4.006 5 N -0.482 5.482 6 C 0.057 3.943 7 H 0.061 0.939 8 C -0.173 4.173 9 C 0.041 3.959 10 C -0.507 4.507 11 H 0.054 0.946 12 C -0.007 4.007 13 N -0.940 5.940 14 Si 0.961 3.039 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.269 1.269 18 C -0.011 4.011 19 H 0.055 0.945 20 H 0.046 0.954 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.060 0.940 30 H -0.008 1.008 31 H -0.013 1.013 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.010 -12.966 7.961 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.118 4.118 4 C -0.135 4.135 5 N -0.204 5.204 6 C -0.052 4.052 7 H 0.079 0.921 8 C -0.231 4.231 9 C 0.004 3.996 10 C -0.545 4.545 11 H 0.072 0.928 12 C -0.203 4.203 13 N -0.582 5.582 14 Si 0.786 3.214 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.193 1.193 18 C -0.139 4.139 19 H 0.075 0.925 20 H 0.065 0.935 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.010 0.990 31 H 0.005 0.995 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.980 -12.124 8.012 15.362 hybrid contribution 0.338 0.530 -0.465 0.782 sum -4.643 -11.594 7.547 14.592 Atomic orbital electron populations 1.21736 0.95153 1.02064 1.01696 1.21444 0.96514 0.93809 1.02621 1.22724 0.95205 0.97795 0.96039 1.23986 0.97032 0.94538 0.97908 1.69152 1.03206 1.37675 1.10340 1.22042 0.94749 0.94611 0.93832 0.92121 1.22431 1.02130 0.97554 1.00981 1.18914 0.94350 0.93036 0.93284 1.21499 1.46159 0.92269 0.94620 0.92766 1.25918 0.95703 1.02999 0.95670 1.70096 1.52162 1.27380 1.08589 0.85508 0.78305 0.78883 0.78698 1.19753 1.20893 1.19336 1.24157 0.93916 0.97932 0.97942 0.92546 0.93514 0.91541 0.91738 0.90349 0.88995 0.90030 0.90498 0.90363 0.92569 0.92084 0.98971 0.99458 0.93115 0.92963 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.90 71.98 0.71 -1.92 16 2 C -0.11 -2.05 5.85 30.59 0.18 -1.88 16 3 C -0.10 -2.61 4.00 -10.39 -0.04 -2.65 16 4 C -0.01 -0.18 7.11 83.57 0.59 0.42 16 5 N -0.48 -19.25 6.07 -901.71 -5.47 -24.72 16 6 C 0.06 2.41 2.38 44.92 0.11 2.52 16 7 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 8 C -0.17 -5.76 7.75 71.98 0.56 -5.20 16 9 C 0.04 2.28 4.56 29.85 0.14 2.41 16 10 C -0.51 -30.34 8.84 25.60 0.23 -30.11 16 11 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 12 C -0.01 -0.42 5.46 84.66 0.46 0.05 16 13 N -0.94 -59.53 13.29 21.45 0.28 -59.24 16 14 Si 0.96 46.87 29.54 68.60 2.03 48.90 16 15 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 17 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 18 C -0.01 -0.36 6.80 83.63 0.57 0.20 16 19 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 21 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 23 H 0.08 1.29 8.14 -2.38 -0.02 1.28 16 24 H 0.09 2.50 8.12 -2.38 -0.02 2.48 16 25 H 0.08 2.11 5.84 -2.39 -0.01 2.10 16 26 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.08 2.10 5.81 -2.39 -0.01 2.09 16 28 H 0.06 1.90 6.47 -2.39 -0.02 1.88 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 32 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 2.75 4.61 -2.39 -0.01 2.74 16 Total: -1.00 -67.56 268.85 1.39 -66.17 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.04 Total: 5.05 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 3.50 Total: -36.16 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -5.18 Total: -83.96 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -67.56 1.39 -66.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705079104.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.008 kcal (2) G-P(sol) polarization free energy of solvation -67.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds