Wall clock time and date at job start Mon Mar 30 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 115.56196 * 2 1 4 4 C 1.53073 * 117.49532 * 214.28140 * 2 1 3 5 5 C 1.53002 * 59.98655 * 252.51831 * 4 2 1 6 6 C 1.53002 * 117.49546 * 107.50084 * 5 4 2 7 7 C 1.52995 * 117.49801 * 252.49894 * 5 4 2 8 8 N 1.46906 * 109.46978 * 248.74880 * 7 5 4 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 H 1.08999 * 109.47595 * 274.31229 * 1 2 3 19 19 H 1.09006 * 109.46944 * 34.31998 * 1 2 3 20 20 H 1.09003 * 109.47098 * 154.31415 * 1 2 3 21 21 H 1.09003 * 109.47183 * 205.68584 * 3 2 1 22 22 H 1.08998 * 109.47429 * 325.68241 * 3 2 1 23 23 H 1.09001 * 109.47442 * 85.68722 * 3 2 1 24 24 H 1.09000 * 117.51032 * 145.03648 * 4 2 1 25 25 H 1.08999 * 117.49764 * 0.02562 * 4 2 1 26 26 H 1.08993 * 109.47375 * 231.25065 * 6 5 4 27 27 H 1.09001 * 109.47129 * 351.25732 * 6 5 4 28 28 H 1.08999 * 109.46624 * 111.25326 * 6 5 4 29 29 H 1.08995 * 109.46859 * 128.75171 * 7 5 4 30 30 H 1.09002 * 109.47639 * 8.74839 * 7 5 4 31 31 H 1.00898 * 110.99995 * 303.95410 * 8 7 5 32 32 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 33 33 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3802 0.0000 4 6 2.2367 -1.1220 -0.7648 5 6 2.2364 -1.1210 0.7652 6 6 1.3587 -2.1558 1.4721 7 6 3.5489 -0.7759 1.4716 8 7 4.0725 -1.9725 2.1439 9 6 5.3348 -1.6781 2.8351 10 6 5.8399 -2.9263 3.5118 11 1 5.2795 -3.8464 3.4357 12 6 7.0181 -2.8940 4.2273 13 7 7.7008 -1.7738 4.3195 14 14 7.6445 -4.4414 5.0655 15 1 7.8720 -5.4984 4.0474 16 1 8.9206 -4.1438 5.7643 17 1 6.6388 -4.9120 6.0515 18 1 -0.3634 0.0773 1.0247 19 1 -0.3633 0.8488 -0.5794 20 1 -0.3633 -0.9261 -0.4454 21 1 3.1824 1.3084 -0.4454 22 1 1.5813 2.0742 -0.5794 23 1 2.2772 1.7414 1.0247 24 1 3.1719 -0.8767 -1.2681 25 1 1.6114 -1.8594 -1.2680 26 1 0.7308 -1.6565 2.2099 27 1 0.7280 -2.6588 0.7390 28 1 1.9921 -2.8894 1.9708 29 1 3.3696 0.0062 2.2094 30 1 4.2747 -0.4242 0.7384 31 1 3.3917 -2.3555 2.7826 32 1 5.1676 -0.9024 3.5824 33 1 6.0732 -1.3325 2.1115 34 1 8.5295 -1.7509 4.8232 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705234772.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:05 Heat of formation + Delta-G solvation = -11.442217 kcal Electronic energy + Delta-G solvation = -12608.867672 eV Core-core repulsion = 10541.022105 eV Total energy + Delta-G solvation = -2067.845567 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.26997 -36.70336 -34.46937 -31.41422 -29.47057 -28.76300 -27.64055 -25.80750 -23.45715 -21.26077 -19.00577 -18.21482 -16.89666 -16.34653 -15.93453 -15.78554 -14.83538 -14.55053 -14.32917 -14.01563 -13.72091 -13.31404 -13.07507 -13.01934 -12.76904 -12.66265 -12.62818 -12.57194 -12.24166 -12.00077 -11.64428 -11.34594 -10.69979 -10.49848 -10.19842 -9.10869 -8.23770 -6.35879 1.40746 1.45003 1.53070 2.39443 2.77282 3.09235 3.53745 3.79783 3.85776 4.01130 4.23330 4.25669 4.54182 4.67591 4.80173 4.84401 4.94990 4.97037 5.03889 5.05605 5.08676 5.10030 5.14373 5.21658 5.25006 5.32897 5.46185 5.58543 5.59936 6.00218 6.43370 6.70983 6.87168 7.35348 8.87969 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.067788 B = 0.006744 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.953553 B = 4150.779625 C = 4385.430735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.118 4.118 3 C -0.117 4.117 4 C -0.161 4.161 5 C -0.128 4.128 6 C -0.112 4.112 7 C 0.101 3.899 8 N -0.685 5.685 9 C 0.207 3.793 10 C -0.538 4.538 11 H 0.066 0.934 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.977 3.023 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.265 1.265 18 H 0.059 0.941 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.047 0.953 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.013 0.987 30 H 0.051 0.949 31 H 0.337 0.663 32 H -0.042 1.042 33 H -0.004 1.004 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 2.558 -7.563 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.118 4.118 3 C -0.174 4.174 4 C -0.198 4.198 5 C -0.128 4.128 6 C -0.169 4.169 7 C -0.028 4.028 8 N -0.317 5.317 9 C 0.079 3.921 10 C -0.576 4.576 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.801 3.199 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.189 1.189 18 H 0.078 0.922 19 H 0.090 0.910 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.097 0.903 23 H 0.069 0.931 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.156 0.844 32 H -0.024 1.024 33 H 0.014 0.986 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.352 2.398 -8.052 15.776 hybrid contribution 0.655 0.127 1.241 1.409 sum -12.698 2.526 -6.810 14.628 Atomic orbital electron populations 1.21319 0.90374 1.02657 1.02117 1.21823 0.95802 0.90866 1.03331 1.21358 0.99960 0.94453 1.01612 1.23392 1.01981 1.01402 0.93037 1.21566 0.96245 1.00899 0.94088 1.21274 0.98105 0.97207 1.00294 1.21316 0.94200 0.90986 0.96309 1.60651 1.06243 1.29343 1.35497 1.19208 0.87432 0.94791 0.90643 1.21517 1.07759 0.96796 1.31561 0.91627 1.26008 0.96693 1.00078 0.97020 1.70094 1.16444 1.28458 1.42559 0.85328 0.77534 0.78556 0.78520 1.19263 1.20677 1.18927 0.92211 0.90972 0.91761 0.93388 0.90318 0.93073 0.89969 0.87689 0.92050 0.91045 0.92428 0.96941 0.93076 0.84380 1.02391 0.98560 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 8.88 71.98 0.64 -1.35 16 2 C -0.12 -2.82 2.70 -52.16 -0.14 -2.96 16 3 C -0.12 -2.72 8.88 71.98 0.64 -2.08 16 4 C -0.16 -4.22 9.12 30.62 0.28 -3.94 16 5 C -0.13 -3.80 2.57 -52.18 -0.13 -3.94 16 6 C -0.11 -3.00 8.55 71.98 0.62 -2.38 16 7 C 0.10 3.91 4.89 86.30 0.42 4.33 16 8 N -0.68 -31.31 6.11 -517.92 -3.16 -34.47 16 9 C 0.21 11.67 5.44 85.56 0.47 12.14 16 10 C -0.54 -31.70 9.32 25.60 0.24 -31.46 16 11 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 12 C 0.00 0.01 5.46 84.66 0.46 0.47 16 13 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 14 Si 0.98 44.94 29.54 68.60 2.03 46.96 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 18 H 0.06 1.09 8.02 -2.39 -0.02 1.07 16 19 H 0.07 1.11 7.92 -2.38 -0.02 1.09 16 20 H 0.06 1.08 7.77 -2.39 -0.02 1.06 16 21 H 0.05 1.20 7.77 -2.39 -0.02 1.18 16 22 H 0.08 1.46 7.92 -2.39 -0.02 1.44 16 23 H 0.05 1.26 8.02 -2.39 -0.02 1.24 16 24 H 0.08 2.28 7.96 -2.39 -0.02 2.26 16 25 H 0.10 2.38 7.96 -2.39 -0.02 2.37 16 26 H 0.06 1.50 8.02 -2.39 -0.02 1.48 16 27 H 0.07 1.62 7.77 -2.39 -0.02 1.60 16 28 H 0.06 1.77 5.84 -2.39 -0.01 1.75 16 29 H 0.01 0.50 8.02 -2.39 -0.02 0.48 16 30 H 0.05 2.06 7.77 -2.39 -0.02 2.04 16 31 H 0.34 14.49 6.53 -89.70 -0.59 13.90 16 32 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 16 33 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -64.78 275.77 3.10 -61.69 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.46 Total: 14.57 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 3.49 Total: -31.17 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -2.88 Total: -92.04 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.78 3.10 -61.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705234772.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.244 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds