Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.56569 * 2 1 4 4 C 1.53006 * 117.49485 * 214.30763 * 2 1 3 5 5 C 1.52999 * 60.00032 * 252.51314 * 4 2 1 6 6 C 1.53002 * 117.49763 * 252.48718 * 5 4 2 7 7 C 1.52998 * 117.49569 * 107.49479 * 5 4 2 8 8 N 1.46902 * 109.47368 * 111.38888 * 7 5 4 9 9 C 1.46893 * 111.00110 * 179.97438 * 8 7 5 10 10 C 1.50708 * 109.47161 * 179.97438 * 9 8 7 11 11 H 1.07991 * 119.99789 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00008 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00089 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 H 1.09005 * 109.46526 * 274.31387 * 1 2 3 19 19 H 1.08999 * 109.46777 * 34.30747 * 1 2 3 20 20 H 1.08997 * 109.47335 * 154.31414 * 1 2 3 21 21 H 1.09000 * 109.47010 * 205.69133 * 3 2 1 22 22 H 1.08993 * 109.47063 * 325.68975 * 3 2 1 23 23 H 1.09000 * 109.47361 * 85.68998 * 3 2 1 24 24 H 1.09000 * 117.49454 * 145.01966 * 4 2 1 25 25 H 1.08997 * 117.50010 * 0.02562 * 4 2 1 26 26 H 1.09000 * 109.47259 * 248.75127 * 6 5 4 27 27 H 1.09003 * 109.46864 * 8.74595 * 6 5 4 28 28 H 1.08998 * 109.47097 * 128.74643 * 6 5 4 29 29 H 1.08994 * 109.47750 * 351.38559 * 7 5 4 30 30 H 1.08999 * 109.46780 * 231.38543 * 7 5 4 31 31 H 1.00899 * 110.99763 * 303.95661 * 8 7 5 32 32 H 1.08994 * 109.47623 * 60.00186 * 9 8 7 33 33 H 1.09000 * 109.47422 * 300.00155 * 9 8 7 34 34 H 0.96997 * 119.99848 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1211 0.7650 6 6 3.5491 -0.7766 1.4714 7 6 1.3588 -2.1562 1.4714 8 7 2.2123 -3.1437 2.1456 9 6 1.4021 -4.1554 2.8367 10 6 2.3102 -5.1491 3.5144 11 1 3.3819 -5.0396 3.4395 12 6 1.7726 -6.1972 4.2309 13 7 2.5650 -7.0641 4.8227 14 14 -0.0812 -6.3861 4.3610 15 1 -0.5718 -5.6463 5.5516 16 1 -0.4240 -7.8247 4.4962 17 1 -0.7218 -5.8374 3.1388 18 1 -0.3632 0.0773 1.0248 19 1 -0.3633 0.8489 -0.5792 20 1 -0.3634 -0.9261 -0.4454 21 1 3.1824 1.3083 -0.4455 22 1 1.5813 2.0742 -0.5792 23 1 2.2774 1.7413 1.0247 24 1 3.1714 -0.8753 -1.2683 25 1 1.6111 -1.8583 -1.2686 26 1 3.9376 -1.6649 1.9696 27 1 4.2748 -0.4247 0.7381 28 1 3.3702 0.0051 2.2097 29 1 0.7296 -2.6604 0.7380 30 1 0.7294 -1.6569 2.2080 31 1 2.8508 -3.5746 1.4939 32 1 0.7729 -4.6735 2.1131 33 1 0.7732 -3.6697 3.5828 34 1 2.1868 -7.8017 5.3264 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705234775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = 9.209974 kcal Electronic energy + Delta-G solvation = -12649.670704 eV Core-core repulsion = 10582.720683 eV Total energy + Delta-G solvation = -2066.950021 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.16226 -34.98901 -32.35072 -30.29877 -28.32014 -27.55955 -26.54303 -24.10711 -21.13741 -20.15940 -17.70630 -16.63928 -15.31214 -14.83383 -14.32576 -14.08385 -13.81016 -13.18551 -13.01816 -12.64240 -12.35832 -12.05845 -12.02740 -11.74490 -11.60878 -11.51026 -11.18336 -10.80255 -10.56575 -10.41850 -9.87853 -9.42787 -9.30925 -9.07527 -8.57511 -7.41453 -6.04695 -4.02384 3.29615 3.36535 3.39234 3.81448 4.43107 4.70393 4.82874 4.91188 5.12676 5.28059 5.41296 5.47425 5.63543 5.66536 5.88353 5.91722 5.94496 5.96279 6.01514 6.05115 6.14990 6.24036 6.37568 6.39054 6.51933 6.80418 6.82813 7.05751 7.62909 7.93287 8.37647 8.67359 9.03562 9.57529 11.08658 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.057991 B = 0.007456 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.714940 B = 3754.320000 C = 4054.390963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.130 4.130 3 C -0.109 4.109 4 C -0.173 4.173 5 C -0.106 4.106 6 C -0.109 4.109 7 C 0.095 3.905 8 N -0.676 5.676 9 C 0.163 3.837 10 C -0.515 4.515 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.878 3.122 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.268 1.268 18 H 0.059 0.941 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.336 0.664 32 H -0.017 1.017 33 H 0.021 0.979 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 13.742 -9.942 17.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.131 4.131 3 C -0.166 4.166 4 C -0.210 4.210 5 C -0.107 4.107 6 C -0.166 4.166 7 C -0.035 4.035 8 N -0.306 5.306 9 C 0.036 3.964 10 C -0.553 4.553 11 H 0.097 0.903 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.193 1.193 18 H 0.078 0.922 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.153 0.847 32 H 0.000 1.000 33 H 0.039 0.961 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.941 13.952 -9.252 16.997 hybrid contribution -1.373 -0.780 -0.631 1.701 sum -4.314 13.172 -9.883 17.023 Atomic orbital electron populations 1.21314 0.92508 1.01473 1.01766 1.21623 0.94512 0.91312 1.05635 1.21280 0.99662 0.94063 1.01639 1.23398 1.01956 1.01092 0.94575 1.21721 0.98404 0.98278 0.92251 1.21234 0.93498 1.02651 0.99187 1.21388 0.93754 0.92700 0.95679 1.60465 1.19763 1.18259 1.32126 1.19994 0.93503 0.89747 0.93203 1.21071 0.95180 1.07833 1.31219 0.90272 1.24907 0.97789 0.95543 0.95127 1.69901 1.34839 1.15053 1.34207 0.86822 0.86440 0.77298 0.78935 1.20152 1.21216 1.19318 0.92225 0.92632 0.92594 0.92637 0.92710 0.92281 0.89192 0.89334 0.89622 0.93845 0.92900 0.96296 0.91586 0.84695 0.99968 0.96079 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 8.88 37.16 0.33 -0.98 16 2 C -0.13 -1.61 2.70 -154.51 -0.42 -2.03 16 3 C -0.11 -1.16 8.88 37.16 0.33 -0.83 16 4 C -0.17 -2.23 9.11 -26.73 -0.24 -2.48 16 5 C -0.11 -1.55 2.51 -154.51 -0.39 -1.94 16 6 C -0.11 -1.57 8.76 37.16 0.33 -1.25 16 7 C 0.09 1.66 4.85 -3.82 -0.02 1.64 16 8 N -0.68 -14.25 5.01 -115.06 -0.58 -14.82 16 9 C 0.16 4.06 4.51 -4.98 -0.02 4.04 16 10 C -0.51 -14.96 9.87 -34.44 -0.34 -15.30 16 11 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 14 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 18 H 0.06 0.70 8.02 -51.93 -0.42 0.29 16 19 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 20 H 0.05 0.66 7.77 -51.93 -0.40 0.25 16 21 H 0.05 0.56 7.77 -51.93 -0.40 0.16 16 22 H 0.05 0.51 7.92 -51.93 -0.41 0.10 16 23 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 24 H 0.09 1.07 7.96 -51.93 -0.41 0.65 16 25 H 0.09 1.14 7.96 -51.93 -0.41 0.73 16 26 H 0.08 1.42 6.69 -51.93 -0.35 1.08 16 27 H 0.04 0.55 7.77 -51.93 -0.40 0.15 16 28 H 0.05 0.74 8.03 -51.93 -0.42 0.32 16 29 H 0.02 0.33 7.78 -51.93 -0.40 -0.07 16 30 H 0.07 1.18 8.02 -51.93 -0.42 0.76 16 31 H 0.34 6.92 8.60 -39.29 -0.34 6.59 16 32 H -0.02 -0.43 7.20 -51.93 -0.37 -0.81 16 33 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 274.10 15.07 4.13 4.13 Total: -1.00 -30.12 274.10 -6.85 -36.97 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.97 Total: 0.92 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.54 Total: -17.22 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.20 Total: -42.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.12 -6.85 -36.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705234775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.181 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds