Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 115.56569 * 2 1 4 4 C 1.53006 * 117.49485 * 214.30763 * 2 1 3 5 5 C 1.52999 * 60.00032 * 252.51314 * 4 2 1 6 6 C 1.53002 * 117.49763 * 252.48718 * 5 4 2 7 7 C 1.52998 * 117.49569 * 107.49479 * 5 4 2 8 8 N 1.46902 * 109.47368 * 111.38888 * 7 5 4 9 9 C 1.46893 * 111.00110 * 179.97438 * 8 7 5 10 10 C 1.50708 * 109.47161 * 179.97438 * 9 8 7 11 11 H 1.07991 * 119.99789 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00008 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00089 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 H 1.09005 * 109.46526 * 274.31387 * 1 2 3 19 19 H 1.08999 * 109.46777 * 34.30747 * 1 2 3 20 20 H 1.08997 * 109.47335 * 154.31414 * 1 2 3 21 21 H 1.09000 * 109.47010 * 205.69133 * 3 2 1 22 22 H 1.08993 * 109.47063 * 325.68975 * 3 2 1 23 23 H 1.09000 * 109.47361 * 85.68998 * 3 2 1 24 24 H 1.09000 * 117.49454 * 145.01966 * 4 2 1 25 25 H 1.08997 * 117.50010 * 0.02562 * 4 2 1 26 26 H 1.09000 * 109.47259 * 248.75127 * 6 5 4 27 27 H 1.09003 * 109.46864 * 8.74595 * 6 5 4 28 28 H 1.08998 * 109.47097 * 128.74643 * 6 5 4 29 29 H 1.08994 * 109.47750 * 351.38559 * 7 5 4 30 30 H 1.08999 * 109.46780 * 231.38543 * 7 5 4 31 31 H 1.00899 * 110.99763 * 303.95661 * 8 7 5 32 32 H 1.08994 * 109.47623 * 60.00186 * 9 8 7 33 33 H 1.09000 * 109.47422 * 300.00155 * 9 8 7 34 34 H 0.96997 * 119.99848 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7650 5 6 2.2364 -1.1211 0.7650 6 6 3.5491 -0.7766 1.4714 7 6 1.3588 -2.1562 1.4714 8 7 2.2123 -3.1437 2.1456 9 6 1.4021 -4.1554 2.8367 10 6 2.3102 -5.1491 3.5144 11 1 3.3819 -5.0396 3.4395 12 6 1.7726 -6.1972 4.2309 13 7 2.5650 -7.0641 4.8227 14 14 -0.0812 -6.3861 4.3610 15 1 -0.5718 -5.6463 5.5516 16 1 -0.4240 -7.8247 4.4962 17 1 -0.7218 -5.8374 3.1388 18 1 -0.3632 0.0773 1.0248 19 1 -0.3633 0.8489 -0.5792 20 1 -0.3634 -0.9261 -0.4454 21 1 3.1824 1.3083 -0.4455 22 1 1.5813 2.0742 -0.5792 23 1 2.2774 1.7413 1.0247 24 1 3.1714 -0.8753 -1.2683 25 1 1.6111 -1.8583 -1.2686 26 1 3.9376 -1.6649 1.9696 27 1 4.2748 -0.4247 0.7381 28 1 3.3702 0.0051 2.2097 29 1 0.7296 -2.6604 0.7380 30 1 0.7294 -1.6569 2.2080 31 1 2.8508 -3.5746 1.4939 32 1 0.7729 -4.6735 2.1131 33 1 0.7732 -3.6697 3.5828 34 1 2.1868 -7.8017 5.3264 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705234775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = -9.830230 kcal Electronic energy + Delta-G solvation = -12650.496349 eV Core-core repulsion = 10582.720683 eV Total energy + Delta-G solvation = -2067.775666 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26225 -36.72092 -34.47366 -31.54371 -29.72248 -28.82538 -27.67517 -25.68754 -23.11414 -21.25192 -19.23418 -18.44392 -16.88791 -16.27493 -15.82936 -15.60879 -14.94889 -14.77568 -14.37112 -14.17822 -13.82683 -13.45278 -13.01920 -12.95644 -12.85133 -12.69547 -12.54654 -12.47500 -12.15377 -11.90108 -11.68535 -11.47159 -10.82728 -10.49560 -10.18273 -9.12756 -8.31698 -6.36287 1.33438 1.34790 1.45953 2.32482 2.76490 3.02134 3.43305 3.80282 3.87540 4.02131 4.23583 4.26122 4.58880 4.64089 4.77937 4.82255 4.85762 4.92990 4.99933 5.05285 5.06606 5.08771 5.11674 5.21381 5.28327 5.32601 5.49706 5.51329 5.65072 5.95261 6.55149 6.64651 6.75234 7.28835 8.85072 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.057991 B = 0.007456 C = 0.006904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.714940 B = 3754.320000 C = 4054.390963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.109 4.109 4 C -0.167 4.167 5 C -0.129 4.129 6 C -0.103 4.103 7 C 0.099 3.901 8 N -0.681 5.681 9 C 0.174 3.826 10 C -0.529 4.529 11 H 0.038 0.962 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.952 3.048 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.253 1.253 18 H 0.054 0.946 19 H 0.076 0.924 20 H 0.050 0.950 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.336 0.664 32 H -0.016 1.016 33 H 0.022 0.978 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 15.252 -11.128 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.116 4.116 3 C -0.166 4.166 4 C -0.204 4.204 5 C -0.130 4.130 6 C -0.160 4.160 7 C -0.030 4.030 8 N -0.311 5.311 9 C 0.046 3.954 10 C -0.567 4.567 11 H 0.056 0.944 12 C -0.189 4.189 13 N -0.587 5.587 14 Si 0.775 3.225 15 H -0.190 1.190 16 H -0.204 1.204 17 H -0.177 1.177 18 H 0.073 0.927 19 H 0.094 0.906 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.002 0.998 33 H 0.040 0.960 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.595 15.485 -10.454 19.240 hybrid contribution -0.759 -1.223 -0.281 1.466 sum -5.353 14.262 -10.735 18.636 Atomic orbital electron populations 1.21362 0.91883 1.02211 1.01855 1.21777 0.95051 0.91668 1.03144 1.21316 1.00178 0.93097 1.02025 1.23460 1.02652 1.01301 0.93017 1.21609 0.98590 0.99472 0.93304 1.21142 0.93937 1.01364 0.99532 1.21387 0.93783 0.92318 0.95534 1.60376 1.20046 1.17682 1.33045 1.19744 0.92845 0.89633 0.93209 1.21335 0.94061 1.09342 1.31943 0.94371 1.25880 1.03594 0.94960 0.94503 1.70050 1.37493 1.15922 1.35241 0.85653 0.79381 0.77743 0.79759 1.19017 1.20409 1.17673 0.92677 0.90557 0.93046 0.92061 0.90961 0.92374 0.87928 0.89438 0.92437 0.91985 0.92828 0.96046 0.92042 0.84665 0.99809 0.95972 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.88 71.98 0.64 -1.73 16 2 C -0.12 -2.56 2.70 -52.18 -0.14 -2.70 16 3 C -0.11 -1.96 8.88 71.98 0.64 -1.32 16 4 C -0.17 -3.92 9.11 30.60 0.28 -3.64 16 5 C -0.13 -3.59 2.51 -52.18 -0.13 -3.72 16 6 C -0.10 -2.88 8.76 71.98 0.63 -2.24 16 7 C 0.10 3.38 4.85 86.30 0.42 3.79 16 8 N -0.68 -28.85 5.01 -517.95 -2.60 -31.45 16 9 C 0.17 8.63 4.51 85.56 0.39 9.01 16 10 C -0.53 -31.44 9.87 25.60 0.25 -31.19 16 11 H 0.04 2.51 8.06 -2.92 -0.02 2.48 16 12 C 0.01 0.49 5.47 84.65 0.46 0.95 16 13 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 14 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 18 H 0.05 1.18 8.02 -2.38 -0.02 1.16 16 19 H 0.08 1.24 7.92 -2.39 -0.02 1.23 16 20 H 0.05 1.09 7.77 -2.39 -0.02 1.07 16 21 H 0.06 1.04 7.77 -2.39 -0.02 1.02 16 22 H 0.07 1.06 7.92 -2.39 -0.02 1.04 16 23 H 0.06 1.07 8.03 -2.39 -0.02 1.05 16 24 H 0.10 2.14 7.96 -2.39 -0.02 2.12 16 25 H 0.09 2.07 7.96 -2.39 -0.02 2.05 16 26 H 0.06 1.93 6.69 -2.39 -0.02 1.91 16 27 H 0.06 1.47 7.77 -2.39 -0.02 1.45 16 28 H 0.05 1.45 8.03 -2.39 -0.02 1.43 16 29 H 0.02 0.72 7.78 -2.39 -0.02 0.70 16 30 H 0.06 2.13 8.02 -2.39 -0.02 2.11 16 31 H 0.34 14.11 8.60 -89.70 -0.77 13.34 16 32 H -0.02 -0.77 7.20 -2.39 -0.02 -0.79 16 33 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -64.88 274.10 3.25 -61.64 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.22 Total: 15.58 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 3.44 Total: -32.80 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -2.30 Total: -91.15 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -64.88 3.25 -61.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705234775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.807 kcal (2) G-P(sol) polarization free energy of solvation -64.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds