Wall clock time and date at job start Mon Mar 30 2020 02:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.53011 * 109.47148 * 119.99855 * 2 1 3 5 5 H 1.08998 * 109.45916 * 60.01891 * 4 2 1 6 6 N 1.46843 * 109.44969 * 300.05155 * 4 2 1 7 7 C 1.46846 * 111.19660 * 178.24733 * 6 4 2 8 8 C 1.53032 * 109.52328 * 61.73971 * 7 6 4 9 9 C 1.53123 * 109.28003 * 300.81965 * 8 7 6 10 10 C 1.53030 * 109.46406 * 180.02562 * 4 2 1 11 11 H 1.09004 * 109.50425 * 59.20164 * 10 4 2 12 12 C 1.50702 * 109.50261 * 299.12236 * 10 4 2 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 4 14 14 C 1.37884 * 119.99942 * 179.72188 * 12 10 4 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 H 1.08996 * 109.47184 * 299.99906 * 1 2 3 21 21 H 1.08999 * 109.47030 * 60.00791 * 1 2 3 22 22 H 1.09006 * 109.46907 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47445 * 239.99529 * 2 1 3 24 24 H 1.09004 * 109.47018 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.46880 * 299.99507 * 3 2 1 26 26 H 1.08995 * 109.47392 * 59.99662 * 3 2 1 27 27 H 1.00910 * 110.99874 * 302.33780 * 6 4 2 28 28 H 1.09001 * 109.46233 * 181.75310 * 7 6 4 29 29 H 1.09002 * 109.46123 * 301.72033 * 7 6 4 30 30 H 1.08994 * 109.50511 * 60.76667 * 8 7 6 31 31 H 1.09007 * 109.50371 * 180.87848 * 8 7 6 32 32 H 1.09000 * 109.51907 * 297.75178 * 9 8 7 33 33 H 1.09000 * 109.52439 * 177.56221 * 9 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6768 -1.7490 1.2490 6 7 1.5492 -0.0294 2.4480 7 6 1.9829 -0.7152 3.6719 8 6 3.5115 -0.7149 3.7441 9 6 4.0760 -1.4258 2.5110 10 6 3.5703 -0.7206 1.2495 11 1 3.9338 0.3069 1.2353 12 6 4.0738 -1.4493 0.0302 13 1 3.3728 -1.8706 -0.6750 14 6 5.4297 -1.5726 -0.1882 15 7 6.2834 -1.0592 0.6704 16 14 6.0538 -2.4691 -1.7035 17 1 5.5546 -1.7857 -2.9237 18 1 7.5388 -2.4639 -1.7051 19 1 5.5642 -3.8710 -1.6860 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.8403 0.9368 2.4524 28 1 1.5782 -0.1972 4.5413 29 1 1.6200 -1.7430 3.6603 30 1 3.8744 0.3125 3.7698 31 1 3.8334 -1.2377 4.6448 32 1 3.7448 -2.4643 2.5058 33 1 5.1651 -1.3900 2.5365 34 1 7.2372 -1.1463 0.5169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709921425.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:52 Heat of formation + Delta-G solvation = -26.979198 kcal Electronic energy + Delta-G solvation = -13568.744393 eV Core-core repulsion = 11500.225091 eV Total energy + Delta-G solvation = -2068.519301 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.54392 -34.14271 -33.05290 -30.04580 -28.94778 -26.46335 -24.81938 -23.14993 -21.30968 -19.40009 -18.56227 -16.22950 -15.19113 -14.64052 -14.07736 -13.61669 -13.38672 -13.03967 -12.46537 -12.31353 -11.91593 -11.54057 -11.24966 -10.97837 -10.83768 -10.77132 -10.58803 -10.24316 -10.09660 -9.90545 -9.70911 -9.62785 -9.31603 -8.62097 -8.29971 -7.35431 -5.95132 -4.01926 3.32126 3.36954 3.39686 4.44876 5.12233 5.32455 5.63549 5.73998 5.81480 5.88330 5.99176 6.10147 6.27691 6.39630 6.45004 6.47470 6.56656 6.62605 6.68295 6.73061 6.90571 6.97050 7.05709 7.21071 7.26840 7.48172 7.72095 7.79635 7.92587 8.12706 8.26067 8.50891 9.01337 9.62093 11.09129 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.014396 C = 0.011154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.025974 B = 1944.565367 C = 2509.663491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C -0.144 4.144 4 C 0.097 3.903 5 H 0.063 0.937 6 N -0.687 5.687 7 C 0.062 3.938 8 C -0.158 4.158 9 C -0.111 4.111 10 C 0.024 3.976 11 H 0.029 0.971 12 C -0.505 4.505 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.278 1.278 20 H 0.058 0.942 21 H 0.036 0.964 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.330 0.670 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.727 2.147 2.062 7.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C -0.201 4.201 4 C -0.012 4.012 5 H 0.081 0.919 6 N -0.316 5.316 7 C -0.068 4.068 8 C -0.197 4.197 9 C -0.149 4.149 10 C 0.004 3.996 11 H 0.047 0.953 12 C -0.544 4.544 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.715 3.285 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.204 1.204 20 H 0.078 0.922 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.148 0.852 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.169 1.855 2.079 7.691 hybrid contribution 1.527 -0.347 -0.749 1.736 sum -5.642 1.507 1.330 5.989 Atomic orbital electron populations 1.21764 0.96610 1.00592 1.00463 1.21020 0.93915 0.96095 0.98825 1.21823 1.02289 0.96266 0.99729 1.21649 0.95860 0.96136 0.87594 0.91905 1.60919 1.62649 1.05857 1.02210 1.21894 0.93664 0.98953 0.92310 1.22348 0.96936 1.00609 0.99793 1.21659 1.03280 0.97027 0.92970 1.19321 0.89880 0.96752 0.93599 0.95294 1.21108 0.91334 1.35172 1.06812 0.92645 1.24961 0.97110 0.95621 0.96266 1.69880 1.01943 1.45665 1.35585 0.86742 0.77575 0.80389 0.83788 1.20316 1.21461 1.20385 0.92246 0.94538 0.93859 0.90482 0.91467 0.94206 0.93664 0.85237 0.92644 0.92018 0.93255 0.93761 0.94882 0.89391 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.04 37.15 0.34 -1.89 16 2 C -0.08 -1.51 2.56 -90.62 -0.23 -1.74 16 3 C -0.14 -2.57 8.51 37.16 0.32 -2.25 16 4 C 0.10 1.98 1.72 -67.72 -0.12 1.87 16 5 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 6 N -0.69 -12.50 5.70 -106.76 -0.61 -13.11 16 7 C 0.06 1.08 6.55 -3.84 -0.03 1.06 16 8 C -0.16 -3.06 6.08 -26.65 -0.16 -3.22 16 9 C -0.11 -2.63 5.03 -26.61 -0.13 -2.76 16 10 C 0.02 0.58 1.43 -91.70 -0.13 0.45 16 11 H 0.03 0.76 6.39 -51.93 -0.33 0.43 16 12 C -0.51 -13.45 7.83 -34.44 -0.27 -13.72 16 13 H 0.06 1.46 6.77 -52.49 -0.36 1.11 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 15 N -0.89 -25.30 11.37 55.43 0.63 -24.67 16 16 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H 0.06 0.95 7.60 -51.93 -0.39 0.56 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 1.59 6.68 -51.93 -0.35 1.25 16 24 H 0.07 1.37 6.41 -51.93 -0.33 1.04 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.74 6.61 -51.93 -0.34 0.40 16 27 H 0.33 5.87 6.88 -39.29 -0.27 5.60 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 257.08 15.07 3.87 3.87 Total: -1.00 -26.89 257.08 -7.27 -34.16 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -5.64 Total: 4.17 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -0.51 Total: -20.63 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.02 Total: -37.78 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.89 -7.27 -34.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709921425.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.185 kcal (2) G-P(sol) polarization free energy of solvation -26.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds