Wall clock time and date at job start Mon Mar 30 2020 02:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.53011 * 109.47148 * 119.99855 * 2 1 3 5 5 H 1.08998 * 109.45916 * 60.01891 * 4 2 1 6 6 N 1.46843 * 109.44969 * 300.05155 * 4 2 1 7 7 C 1.46846 * 111.19660 * 178.24733 * 6 4 2 8 8 C 1.53032 * 109.52328 * 61.73971 * 7 6 4 9 9 C 1.53123 * 109.28003 * 300.81965 * 8 7 6 10 10 C 1.53030 * 109.46406 * 180.02562 * 4 2 1 11 11 H 1.09004 * 109.50425 * 59.20164 * 10 4 2 12 12 C 1.50702 * 109.50261 * 299.12236 * 10 4 2 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 4 14 14 C 1.37884 * 119.99942 * 179.72188 * 12 10 4 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 H 1.08996 * 109.47184 * 299.99906 * 1 2 3 21 21 H 1.08999 * 109.47030 * 60.00791 * 1 2 3 22 22 H 1.09006 * 109.46907 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47445 * 239.99529 * 2 1 3 24 24 H 1.09004 * 109.47018 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.46880 * 299.99507 * 3 2 1 26 26 H 1.08995 * 109.47392 * 59.99662 * 3 2 1 27 27 H 1.00910 * 110.99874 * 302.33780 * 6 4 2 28 28 H 1.09001 * 109.46233 * 181.75310 * 7 6 4 29 29 H 1.09002 * 109.46123 * 301.72033 * 7 6 4 30 30 H 1.08994 * 109.50511 * 60.76667 * 8 7 6 31 31 H 1.09007 * 109.50371 * 180.87848 * 8 7 6 32 32 H 1.09000 * 109.51907 * 297.75178 * 9 8 7 33 33 H 1.09000 * 109.52439 * 177.56221 * 9 8 7 34 34 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6768 -1.7490 1.2490 6 7 1.5492 -0.0294 2.4480 7 6 1.9829 -0.7152 3.6719 8 6 3.5115 -0.7149 3.7441 9 6 4.0760 -1.4258 2.5110 10 6 3.5703 -0.7206 1.2495 11 1 3.9338 0.3069 1.2353 12 6 4.0738 -1.4493 0.0302 13 1 3.3728 -1.8706 -0.6750 14 6 5.4297 -1.5726 -0.1882 15 7 6.2834 -1.0592 0.6704 16 14 6.0538 -2.4691 -1.7035 17 1 5.5546 -1.7857 -2.9237 18 1 7.5388 -2.4639 -1.7051 19 1 5.5642 -3.8710 -1.6860 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.8403 0.9368 2.4524 28 1 1.5782 -0.1972 4.5413 29 1 1.6200 -1.7430 3.6603 30 1 3.8744 0.3125 3.7698 31 1 3.8334 -1.2377 4.6448 32 1 3.7448 -2.4643 2.5058 33 1 5.1651 -1.3900 2.5365 34 1 7.2372 -1.1463 0.5169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709921425.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:52 Heat of formation + Delta-G solvation = -43.012122 kcal Electronic energy + Delta-G solvation = -13569.439633 eV Core-core repulsion = 11500.225091 eV Total energy + Delta-G solvation = -2069.214541 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.19603 -35.67455 -35.02672 -31.86544 -30.59667 -27.86324 -26.78279 -24.74970 -23.01811 -21.11110 -20.17554 -18.28959 -16.83392 -16.46257 -15.67624 -15.37820 -14.95944 -14.77393 -13.98026 -13.90295 -13.58033 -13.09360 -12.87736 -12.74923 -12.63317 -12.43530 -12.32568 -11.99450 -11.79720 -11.58596 -11.34758 -11.28068 -11.09319 -10.52208 -10.33235 -8.99463 -8.02939 -6.17468 1.39924 1.40225 1.47440 2.43428 3.21004 3.60430 4.09279 4.25002 4.31632 4.41287 4.46248 4.56549 4.84827 4.88235 4.89457 4.96184 5.00637 5.09049 5.19946 5.27300 5.30654 5.34871 5.41808 5.55337 5.65560 5.71302 5.77133 5.98149 6.05095 6.23878 6.52582 6.70956 6.95207 7.49206 8.97837 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.032474 B = 0.014396 C = 0.011154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.025974 B = 1944.565367 C = 2509.663491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.081 4.081 3 C -0.136 4.136 4 C 0.107 3.893 5 H 0.048 0.952 6 N -0.675 5.675 7 C 0.065 3.935 8 C -0.149 4.149 9 C -0.110 4.110 10 C 0.026 3.974 11 H 0.003 0.997 12 C -0.517 4.517 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.944 3.056 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.274 1.274 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.032 0.968 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.335 0.665 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.020 0.980 33 H 0.052 0.948 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.351 2.508 2.252 9.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.003 4.003 5 H 0.066 0.934 6 N -0.304 5.304 7 C -0.065 4.065 8 C -0.188 4.188 9 C -0.148 4.148 10 C 0.006 3.994 11 H 0.021 0.979 12 C -0.555 4.555 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.559 5.559 16 Si 0.771 3.229 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.199 1.199 20 H 0.085 0.915 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.808 2.218 2.269 9.362 hybrid contribution 2.045 -0.460 -0.790 2.239 sum -6.763 1.758 1.479 7.143 Atomic orbital electron populations 1.21655 0.93938 1.01044 1.01727 1.20984 0.96069 0.96098 0.96821 1.21736 1.00010 0.96057 1.01561 1.21412 0.93146 0.96018 0.89680 0.93385 1.60906 1.61881 1.05989 1.01606 1.21970 0.91903 0.99560 0.93075 1.22255 0.98497 0.99888 0.98202 1.21523 1.01212 0.96870 0.95220 1.19270 0.92508 0.94731 0.92889 0.97865 1.21466 0.91496 1.34894 1.07691 0.93020 1.25677 0.97506 0.96566 0.98857 1.70025 1.01903 1.46934 1.37078 0.85822 0.76910 0.79387 0.80810 1.19651 1.21368 1.19926 0.91516 0.92687 0.93848 0.92903 0.94854 0.92262 0.91930 0.84638 0.89132 0.91988 0.93564 0.92024 0.96135 0.92945 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.04 71.98 0.65 -3.11 16 2 C -0.08 -2.97 2.56 -10.79 -0.03 -2.99 16 3 C -0.14 -4.71 8.51 71.98 0.61 -4.10 16 4 C 0.11 4.34 1.72 44.94 0.08 4.41 16 5 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 6 N -0.67 -23.05 5.70 -491.69 -2.80 -25.85 16 7 C 0.06 2.09 6.55 86.32 0.57 2.65 16 8 C -0.15 -5.62 6.08 30.65 0.19 -5.43 16 9 C -0.11 -5.28 5.03 30.67 0.15 -5.13 16 10 C 0.03 1.26 1.43 -11.49 -0.02 1.25 16 11 H 0.00 0.18 6.39 -2.38 -0.02 0.16 16 12 C -0.52 -28.12 7.83 25.60 0.20 -27.92 16 13 H 0.05 2.78 6.77 -2.91 -0.02 2.76 16 14 C 0.01 0.66 5.31 84.66 0.45 1.11 16 15 N -0.92 -53.66 11.37 21.45 0.24 -53.41 16 16 Si 0.94 44.14 29.54 68.60 2.03 46.16 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H 0.07 1.90 7.60 -2.39 -0.02 1.88 16 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.05 2.18 6.68 -2.38 -0.02 2.17 16 24 H 0.03 1.36 6.41 -2.38 -0.02 1.34 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.91 6.61 -2.39 -0.02 1.90 16 27 H 0.34 11.11 6.88 -89.69 -0.62 10.49 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 2.88 6.17 -2.39 -0.01 2.87 16 34 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -58.25 257.08 2.76 -55.48 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.44 Total: 16.88 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 2.85 Total: -39.25 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -2.56 Total: -79.27 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -58.25 2.76 -55.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709921425.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.468 kcal (2) G-P(sol) polarization free energy of solvation -58.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds