Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 C 1.52989 * 109.47414 * 120.00496 * 2 1 3 5 5 H 1.09002 * 109.46096 * 305.03186 * 4 2 1 6 6 N 1.46845 * 109.46573 * 185.06763 * 4 2 1 7 7 C 1.46844 * 111.20103 * 178.24487 * 6 4 2 8 8 C 1.53035 * 109.52868 * 61.73288 * 7 6 4 9 9 C 1.53111 * 109.27925 * 300.82795 * 8 7 6 10 10 C 1.53035 * 109.46632 * 65.00817 * 4 2 1 11 11 H 1.09004 * 109.50276 * 299.17908 * 10 4 2 12 12 C 1.50699 * 109.50005 * 59.25309 * 10 4 2 13 13 H 1.08004 * 120.00067 * 35.16953 * 12 10 4 14 14 C 1.37884 * 120.00076 * 215.43616 * 12 10 4 15 15 N 1.31517 * 119.99562 * 173.88750 * 14 12 10 16 16 Si 1.86797 * 119.99741 * 353.88624 * 14 12 10 17 17 H 1.48504 * 109.46927 * 93.72185 * 16 14 12 18 18 H 1.48502 * 109.46744 * 213.71660 * 16 14 12 19 19 H 1.48491 * 109.47282 * 333.71955 * 16 14 12 20 20 H 1.09003 * 109.47439 * 299.99869 * 1 2 3 21 21 H 1.09001 * 109.47133 * 59.99574 * 1 2 3 22 22 H 1.09001 * 109.47345 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47034 * 240.00485 * 2 1 3 24 24 H 1.09001 * 109.47426 * 184.94632 * 3 2 1 25 25 H 1.08993 * 109.47712 * 304.95123 * 3 2 1 26 26 H 1.09007 * 109.46651 * 64.94680 * 3 2 1 27 27 H 1.00907 * 110.99645 * 302.33133 * 6 4 2 28 28 H 1.09005 * 109.46559 * 181.75294 * 7 6 4 29 29 H 1.09004 * 109.45867 * 301.71755 * 7 6 4 30 30 H 1.09006 * 109.50059 * 60.76727 * 8 7 6 31 31 H 1.08997 * 109.50856 * 180.87978 * 8 7 6 32 32 H 1.09003 * 109.52078 * 297.74225 * 9 8 7 33 33 H 1.09007 * 109.52710 * 177.55590 * 9 8 7 34 34 H 0.97008 * 119.99334 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6048 -0.2621 2.1367 6 7 3.5033 -0.6162 1.3116 7 6 4.0309 -1.2615 2.5205 8 6 3.6856 -2.7522 2.4969 9 6 2.1650 -2.9179 2.4295 10 6 1.6353 -2.1959 1.1875 11 1 0.5485 -2.2740 1.1562 12 6 2.2208 -2.8270 -0.0494 13 1 3.1927 -2.5179 -0.4050 14 6 1.5134 -3.7950 -0.7304 15 7 1.9680 -4.2593 -1.8738 16 14 -0.0904 -4.4468 -0.0288 17 1 -1.2276 -3.6799 -0.5980 18 1 -0.2367 -5.8824 -0.3792 19 1 -0.0819 -4.2962 1.4485 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1264 1.4438 -0.0886 25 1 1.6061 1.9814 -0.8422 26 1 1.7507 1.9301 0.9311 27 1 3.9292 -1.0005 0.4815 28 1 5.1137 -1.1400 2.5541 29 1 3.5863 -0.7997 3.4021 30 1 4.1415 -3.2175 1.6228 31 1 4.0638 -3.2278 3.4017 32 1 1.7117 -2.4871 3.3223 33 1 1.9162 -3.9774 2.3686 34 1 1.4701 -4.9401 -2.3531 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709921434.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -43.453549 kcal Electronic energy + Delta-G solvation = -13703.919551 eV Core-core repulsion = 11634.685868 eV Total energy + Delta-G solvation = -2069.233683 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26185 -35.74448 -34.68118 -32.43564 -30.75326 -27.80568 -26.83221 -24.35375 -23.28939 -20.93640 -20.62883 -18.38806 -16.59570 -16.42291 -15.94342 -15.35499 -14.76161 -14.70950 -14.35162 -14.03567 -13.86438 -13.21548 -12.93068 -12.86769 -12.71472 -12.56568 -11.99965 -11.87891 -11.76447 -11.71534 -11.42316 -11.20978 -10.96769 -10.68980 -10.49914 -8.94364 -8.22177 -6.18835 1.29738 1.34580 1.43328 2.37067 3.15256 3.62419 4.07125 4.18816 4.34816 4.41317 4.48828 4.56617 4.72960 4.80388 4.88212 4.91872 4.98357 5.06888 5.09100 5.14245 5.26732 5.29911 5.35876 5.41366 5.53917 5.66254 5.69003 5.79397 5.84537 6.33181 6.49154 6.69603 6.85290 7.43560 8.94161 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.028765 B = 0.017578 C = 0.013680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.180957 B = 1592.542112 C = 2046.309728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C -0.122 4.122 4 C 0.113 3.887 5 H 0.066 0.934 6 N -0.675 5.675 7 C 0.065 3.935 8 C -0.141 4.141 9 C -0.113 4.113 10 C -0.024 4.024 11 H 0.028 0.972 12 C -0.474 4.474 13 H 0.043 0.957 14 C 0.014 3.986 15 N -0.951 5.951 16 Si 0.922 3.078 17 H -0.273 1.273 18 H -0.297 1.297 19 H -0.248 1.248 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.032 0.968 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.334 0.666 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 7.603 8.222 11.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C -0.179 4.179 4 C 0.003 3.997 5 H 0.085 0.915 6 N -0.304 5.304 7 C -0.065 4.065 8 C -0.180 4.180 9 C -0.151 4.151 10 C -0.044 4.044 11 H 0.046 0.954 12 C -0.512 4.512 13 H 0.061 0.939 14 C -0.182 4.182 15 N -0.593 5.593 16 Si 0.748 3.252 17 H -0.199 1.199 18 H -0.224 1.224 19 H -0.171 1.171 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.024 8.136 8.380 11.725 hybrid contribution -0.822 -2.057 -0.552 2.283 sum -1.846 6.080 7.828 10.082 Atomic orbital electron populations 1.21762 0.95588 1.00504 1.01784 1.20971 0.95267 0.96290 0.97731 1.21592 1.01030 0.94449 1.00853 1.21390 0.88055 0.93444 0.96810 0.91548 1.60946 1.05435 1.58600 1.05374 1.21961 0.99879 0.91018 0.93653 1.22035 0.96107 0.99074 1.00760 1.21730 0.96475 0.99033 0.97879 1.19908 0.96006 0.95146 0.93371 0.95411 1.20993 1.03371 1.18997 1.07869 0.93926 1.25697 1.00515 0.97269 0.94724 1.70054 1.41547 1.31398 1.16290 0.86122 0.81402 0.77148 0.80530 1.19905 1.22428 1.17117 0.91591 0.92431 0.94927 0.93444 0.92727 0.93256 0.92574 0.84850 0.90316 0.90727 0.94034 0.91574 0.92972 0.95217 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 8.95 71.98 0.64 -4.08 16 2 C -0.08 -3.08 2.46 -10.80 -0.03 -3.11 16 3 C -0.12 -3.70 8.89 71.98 0.64 -3.06 16 4 C 0.11 4.25 1.76 44.93 0.08 4.33 16 5 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 6 N -0.68 -24.14 5.57 -491.70 -2.74 -26.88 16 7 C 0.06 2.04 6.55 86.33 0.57 2.61 16 8 C -0.14 -5.05 5.82 30.64 0.18 -4.87 16 9 C -0.11 -4.51 5.24 30.67 0.16 -4.35 16 10 C -0.02 -1.05 1.42 -11.49 -0.02 -1.06 16 11 H 0.03 1.25 4.12 -2.38 -0.01 1.24 16 12 C -0.47 -24.99 6.09 25.60 0.16 -24.83 16 13 H 0.04 2.47 6.55 -2.91 -0.02 2.46 16 14 C 0.01 0.79 5.47 84.66 0.46 1.25 16 15 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 16 Si 0.92 44.26 26.55 68.60 1.82 46.09 16 17 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 19 H -0.25 -11.12 6.16 99.48 0.61 -10.50 16 20 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 21 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.03 1.25 6.58 -2.39 -0.02 1.24 16 23 H 0.05 2.12 7.02 -2.39 -0.02 2.11 16 24 H 0.05 1.70 7.65 -2.39 -0.02 1.68 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.33 13.46 7.02 -89.69 -0.63 12.83 16 28 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.04 1.74 7.33 -2.38 -0.02 1.73 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.03 1.27 7.17 -2.38 -0.02 1.25 16 34 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -59.16 254.14 2.56 -56.59 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.34 Total: 19.58 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 2.84 Total: -37.19 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -2.44 Total: -85.07 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.82 Total: 46.09 kcal Total: -59.16 2.56 -56.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709921434.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.141 kcal (2) G-P(sol) polarization free energy of solvation -59.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds