Wall clock time and date at job start Mon Mar 30 2020 01:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47061 * 2 1 4 4 C 1.53001 * 109.99977 * 173.47666 * 3 2 1 5 5 C 1.52999 * 109.47194 * 179.22173 * 4 3 2 6 6 C 1.54326 * 109.88240 * 294.56964 * 3 2 1 7 7 C 1.55162 * 103.10064 * 141.69960 * 6 3 2 8 8 C 1.54907 * 101.58155 * 324.40878 * 7 6 3 9 9 N 1.47420 * 104.82871 * 37.01380 * 8 7 6 10 10 C 1.36939 * 125.64630 * 155.91324 * 9 8 7 11 11 H 1.07999 * 119.99842 * 195.29511 * 10 9 8 12 12 C 1.38812 * 120.00416 * 15.29824 * 10 9 8 13 13 N 1.31625 * 119.99731 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00488 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47145 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47154 * 119.99928 * 14 12 10 17 17 H 1.48500 * 109.47128 * 239.99925 * 14 12 10 18 18 H 1.08999 * 109.47049 * 59.27209 * 1 2 3 19 19 H 1.09002 * 109.47162 * 179.26695 * 1 2 3 20 20 H 1.08995 * 109.47444 * 299.27075 * 1 2 3 21 21 H 1.08999 * 109.46770 * 239.99709 * 2 1 3 22 22 H 1.09002 * 109.46882 * 120.00060 * 2 1 3 23 23 H 1.09003 * 109.46921 * 299.22521 * 4 3 2 24 24 H 1.09005 * 109.47231 * 59.22459 * 4 3 2 25 25 H 1.08997 * 109.47478 * 293.59014 * 5 4 3 26 26 H 1.09000 * 109.46992 * 53.59031 * 5 4 3 27 27 H 1.09000 * 109.47074 * 173.59031 * 5 4 3 28 28 H 1.09002 * 110.72090 * 23.25122 * 6 3 2 29 29 H 1.09000 * 110.72431 * 260.15213 * 6 3 2 30 30 H 1.08995 * 111.00250 * 82.48894 * 7 6 3 31 31 H 1.09006 * 111.00142 * 206.33577 * 7 6 3 32 32 H 1.09002 * 110.36221 * 155.84400 * 8 7 6 33 33 H 1.08995 * 110.36927 * 278.05755 * 8 7 6 34 34 H 0.97002 * 120.00129 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5611 1.4597 0.1633 5 6 4.0600 2.9059 0.1423 6 6 1.6460 2.1384 -1.3199 7 6 1.2829 3.5766 -0.8644 8 6 0.6276 3.3102 0.5137 9 7 1.4074 2.2021 1.0945 10 6 1.5250 1.9231 2.4300 11 1 2.3013 1.2568 2.7761 12 6 0.6465 2.4966 3.3389 13 7 -0.2994 3.3090 2.9171 14 14 0.8073 2.1166 5.1607 15 1 1.9424 1.1829 5.3733 16 1 1.0542 3.3752 5.9090 17 1 -0.4472 1.4889 5.6481 18 1 -0.3633 0.5251 -0.8834 19 1 -0.3633 -1.0276 -0.0131 20 1 -0.3634 0.5024 0.8964 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 3.8299 0.9964 1.1127 24 1 4.0207 0.9049 -0.6547 25 1 3.8932 3.3335 -0.8463 26 1 3.5169 3.4884 0.8864 27 1 5.1254 2.9261 0.3718 28 1 0.7839 1.6480 -1.7721 29 1 2.4867 2.1543 -2.0135 30 1 2.1773 4.1906 -0.7596 31 1 0.5733 4.0367 -1.5521 32 1 0.6988 4.1958 1.1451 33 1 -0.4148 3.0177 0.3879 34 1 -0.9131 3.7101 3.5523 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721220230.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:51 Heat of formation + Delta-G solvation = 8.467600 kcal Electronic energy + Delta-G solvation = -13868.734140 eV Core-core repulsion = 11801.751927 eV Total energy + Delta-G solvation = -2066.982213 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.62199 -32.94153 -31.78883 -31.24673 -29.16026 -26.36775 -24.50407 -22.72091 -21.17864 -20.13360 -18.28694 -16.03872 -15.36796 -14.53392 -13.79805 -13.65388 -13.44254 -12.61769 -12.01187 -11.92560 -11.81231 -11.42285 -11.30748 -10.91496 -10.85580 -10.72434 -10.38007 -10.31603 -9.98333 -9.96848 -9.65013 -9.48014 -9.41771 -9.21705 -8.48092 -6.64525 -5.65400 -2.98540 3.42802 3.49567 3.51033 4.55770 5.39361 5.48466 5.57672 5.79507 5.91098 5.93193 6.02748 6.15297 6.20427 6.26028 6.37746 6.41176 6.51297 6.61289 6.68483 6.70672 6.80808 6.93281 6.97012 7.14379 7.20216 7.25092 7.40694 7.66366 7.75523 7.90442 8.39598 9.31393 9.92997 10.63948 11.47105 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035109 B = 0.014445 C = 0.014112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.319878 B = 1937.967697 C = 1983.615709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.183 3.817 4 C -0.120 4.120 5 C -0.141 4.141 6 C -0.121 4.121 7 C -0.154 4.154 8 C 0.177 3.823 9 N -0.582 5.582 10 C -0.213 4.213 11 H 0.072 0.928 12 C -0.007 4.007 13 N -0.919 5.919 14 Si 0.903 3.097 15 H -0.281 1.281 16 H -0.293 1.293 17 H -0.292 1.292 18 H 0.040 0.960 19 H 0.028 0.972 20 H 0.078 0.922 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 -2.241 -6.801 8.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.094 3.906 4 C -0.159 4.159 5 C -0.198 4.198 6 C -0.159 4.159 7 C -0.192 4.192 8 C 0.052 3.948 9 N -0.306 5.306 10 C -0.342 4.342 11 H 0.090 0.910 12 C -0.204 4.204 13 N -0.566 5.566 14 Si 0.734 3.266 15 H -0.206 1.206 16 H -0.220 1.220 17 H -0.219 1.219 18 H 0.059 0.941 19 H 0.048 0.952 20 H 0.097 0.903 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.851 -2.171 -6.584 7.930 hybrid contribution 0.003 -0.267 1.034 1.068 sum 3.854 -2.438 -5.550 7.183 Atomic orbital electron populations 1.21653 0.95998 0.99008 1.02945 1.21817 0.96472 0.98034 0.99462 1.20458 0.91069 0.90657 0.88462 1.21825 0.97444 0.96561 1.00094 1.21752 0.98749 0.97813 1.01504 1.22597 0.99875 0.96794 0.96606 1.23139 1.00340 0.95708 1.00018 1.21343 0.92798 0.92053 0.88612 1.44525 1.56439 1.29155 1.00434 1.18947 1.09904 1.24318 0.81068 0.91043 1.24846 0.97124 1.00598 0.97800 1.69951 1.19916 1.34357 1.32380 0.86174 0.77137 0.77458 0.85834 1.20615 1.22001 1.21939 0.94057 0.95239 0.90316 0.94286 0.92799 0.92623 0.94014 0.93806 0.90894 0.94981 0.92004 0.92740 0.91992 0.93024 0.91726 0.95883 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.48 37.16 0.35 -2.39 16 2 C -0.12 -2.29 4.91 -26.73 -0.13 -2.42 16 3 C 0.18 3.68 0.52 -130.59 -0.07 3.62 16 4 C -0.12 -2.24 4.82 -26.73 -0.13 -2.37 16 5 C -0.14 -2.55 8.31 37.16 0.31 -2.24 16 6 C -0.12 -2.18 5.29 -24.89 -0.13 -2.32 16 7 C -0.15 -2.94 6.47 -24.58 -0.16 -3.10 16 8 C 0.18 4.23 5.40 -2.53 -0.01 4.22 16 9 N -0.58 -14.04 1.04 -155.06 -0.16 -14.20 16 10 C -0.21 -5.73 9.33 -15.06 -0.14 -5.87 16 11 H 0.07 1.91 7.41 -52.49 -0.39 1.52 16 12 C -0.01 -0.21 5.47 -17.43 -0.10 -0.30 16 13 N -0.92 -26.63 10.60 55.49 0.59 -26.04 16 14 Si 0.90 22.14 29.55 -169.99 -5.02 17.11 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H 0.04 0.77 6.37 -51.93 -0.33 0.44 16 19 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.08 1.88 7.28 -51.93 -0.38 1.50 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 23 H 0.06 1.11 7.63 -51.93 -0.40 0.72 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.73 6.03 -51.93 -0.31 0.41 16 26 H 0.07 1.54 7.21 -51.93 -0.37 1.16 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 1.09 6.11 -51.93 -0.32 0.77 16 29 H 0.05 0.88 7.34 -51.93 -0.38 0.50 16 30 H 0.06 1.15 5.97 -51.93 -0.31 0.84 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.73 6.98 -51.93 -0.36 1.37 16 33 H 0.02 0.60 8.04 -51.93 -0.42 0.19 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 256.03 15.07 3.86 3.86 Total: -1.00 -27.89 256.03 -6.59 -34.47 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.64 Total: -2.03 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.21 Total: -13.17 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.43 Total: -40.24 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.89 -6.59 -34.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721220230.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.942 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds