Wall clock time and date at job start Mon Mar 30 2020 01:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47061 * 2 1 4 4 C 1.53001 * 109.99977 * 173.47666 * 3 2 1 5 5 C 1.52999 * 109.47194 * 179.22173 * 4 3 2 6 6 C 1.54326 * 109.88240 * 294.56964 * 3 2 1 7 7 C 1.55162 * 103.10064 * 141.69960 * 6 3 2 8 8 C 1.54907 * 101.58155 * 324.40878 * 7 6 3 9 9 N 1.47420 * 104.82871 * 37.01380 * 8 7 6 10 10 C 1.36939 * 125.64630 * 155.91324 * 9 8 7 11 11 H 1.07999 * 119.99842 * 195.29511 * 10 9 8 12 12 C 1.38812 * 120.00416 * 15.29824 * 10 9 8 13 13 N 1.31625 * 119.99731 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00488 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47145 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47154 * 119.99928 * 14 12 10 17 17 H 1.48500 * 109.47128 * 239.99925 * 14 12 10 18 18 H 1.08999 * 109.47049 * 59.27209 * 1 2 3 19 19 H 1.09002 * 109.47162 * 179.26695 * 1 2 3 20 20 H 1.08995 * 109.47444 * 299.27075 * 1 2 3 21 21 H 1.08999 * 109.46770 * 239.99709 * 2 1 3 22 22 H 1.09002 * 109.46882 * 120.00060 * 2 1 3 23 23 H 1.09003 * 109.46921 * 299.22521 * 4 3 2 24 24 H 1.09005 * 109.47231 * 59.22459 * 4 3 2 25 25 H 1.08997 * 109.47478 * 293.59014 * 5 4 3 26 26 H 1.09000 * 109.46992 * 53.59031 * 5 4 3 27 27 H 1.09000 * 109.47074 * 173.59031 * 5 4 3 28 28 H 1.09002 * 110.72090 * 23.25122 * 6 3 2 29 29 H 1.09000 * 110.72431 * 260.15213 * 6 3 2 30 30 H 1.08995 * 111.00250 * 82.48894 * 7 6 3 31 31 H 1.09006 * 111.00142 * 206.33577 * 7 6 3 32 32 H 1.09002 * 110.36221 * 155.84400 * 8 7 6 33 33 H 1.08995 * 110.36927 * 278.05755 * 8 7 6 34 34 H 0.97002 * 120.00129 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5611 1.4597 0.1633 5 6 4.0600 2.9059 0.1423 6 6 1.6460 2.1384 -1.3199 7 6 1.2829 3.5766 -0.8644 8 6 0.6276 3.3102 0.5137 9 7 1.4074 2.2021 1.0945 10 6 1.5250 1.9231 2.4300 11 1 2.3013 1.2568 2.7761 12 6 0.6465 2.4966 3.3389 13 7 -0.2994 3.3090 2.9171 14 14 0.8073 2.1166 5.1607 15 1 1.9424 1.1829 5.3733 16 1 1.0542 3.3752 5.9090 17 1 -0.4472 1.4889 5.6481 18 1 -0.3633 0.5251 -0.8834 19 1 -0.3633 -1.0276 -0.0131 20 1 -0.3634 0.5024 0.8964 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 3.8299 0.9964 1.1127 24 1 4.0207 0.9049 -0.6547 25 1 3.8932 3.3335 -0.8463 26 1 3.5169 3.4884 0.8864 27 1 5.1254 2.9261 0.3718 28 1 0.7839 1.6480 -1.7721 29 1 2.4867 2.1543 -2.0135 30 1 2.1773 4.1906 -0.7596 31 1 0.5733 4.0367 -1.5521 32 1 0.6988 4.1958 1.1451 33 1 -0.4148 3.0177 0.3879 34 1 -0.9131 3.7101 3.5523 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721220230.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:51 Heat of formation + Delta-G solvation = -6.028786 kcal Electronic energy + Delta-G solvation = -13869.362750 eV Core-core repulsion = 11801.751927 eV Total energy + Delta-G solvation = -2067.610823 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27528 -34.88416 -33.46349 -32.78802 -31.07354 -27.96065 -26.45313 -24.39903 -22.69399 -21.88836 -20.03970 -17.98644 -16.99526 -16.42536 -15.62525 -15.31218 -15.04761 -14.24362 -13.69788 -13.63899 -13.46227 -13.04667 -12.96944 -12.83663 -12.71829 -12.27752 -12.08529 -11.98297 -11.86455 -11.53724 -11.39889 -11.28140 -10.99630 -10.77741 -10.56388 -8.63558 -7.76681 -5.08652 1.44510 1.45815 1.54589 2.54251 3.42450 3.71598 4.00606 4.22871 4.32017 4.40261 4.51760 4.61522 4.66965 4.77070 4.81557 4.96395 5.00244 5.09441 5.15115 5.18591 5.28386 5.36904 5.44310 5.57282 5.59714 5.70196 5.71197 5.79379 5.80440 5.89653 6.37050 7.23110 7.93985 8.62178 9.35195 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.035109 B = 0.014445 C = 0.014112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.319878 B = 1937.967697 C = 1983.615709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 C 0.169 3.831 4 C -0.117 4.117 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.140 4.140 8 C 0.183 3.817 9 N -0.593 5.593 10 C -0.206 4.206 11 H 0.069 0.931 12 C -0.066 4.066 13 N -0.949 5.949 14 Si 0.959 3.041 15 H -0.269 1.269 16 H -0.297 1.297 17 H -0.298 1.298 18 H 0.050 0.950 19 H 0.049 0.951 20 H 0.028 0.972 21 H 0.075 0.925 22 H 0.036 0.964 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.024 0.976 33 H -0.010 1.010 34 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 -3.269 -8.751 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C 0.081 3.919 4 C -0.156 4.156 5 C -0.192 4.192 6 C -0.149 4.149 7 C -0.179 4.179 8 C 0.058 3.942 9 N -0.316 5.316 10 C -0.336 4.336 11 H 0.087 0.913 12 C -0.259 4.259 13 N -0.599 5.599 14 Si 0.790 3.210 15 H -0.194 1.194 16 H -0.225 1.225 17 H -0.225 1.225 18 H 0.069 0.931 19 H 0.068 0.932 20 H 0.047 0.953 21 H 0.094 0.906 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.008 0.992 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.441 -3.224 -8.556 10.639 hybrid contribution -0.450 0.022 1.595 1.657 sum 4.991 -3.202 -6.961 9.145 Atomic orbital electron populations 1.21535 0.96619 0.99767 1.00851 1.21802 0.95805 0.97557 1.00378 1.20820 0.91887 0.90959 0.88232 1.21794 0.96204 0.97220 1.00387 1.21665 0.99283 0.96868 1.01352 1.22595 1.01455 0.95071 0.95811 1.23005 1.00631 0.97171 0.97060 1.21079 0.91816 0.90473 0.90847 1.44672 1.56323 1.30049 1.00585 1.19155 1.08900 1.22745 0.82764 0.91275 1.25506 0.97617 1.01452 1.01324 1.70147 1.20957 1.35883 1.32913 0.85268 0.76965 0.77022 0.81764 1.19378 1.22458 1.22536 0.93083 0.93155 0.95303 0.90623 0.94472 0.94670 0.90584 0.91862 0.94777 0.93194 0.91279 0.89347 0.91220 0.90908 0.95768 0.99180 0.94917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.48 71.98 0.68 -4.31 16 2 C -0.12 -4.20 4.91 30.59 0.15 -4.05 16 3 C 0.17 6.43 0.52 3.86 0.00 6.43 16 4 C -0.12 -4.01 4.82 30.59 0.15 -3.87 16 5 C -0.13 -4.49 8.31 71.98 0.60 -3.89 16 6 C -0.11 -3.61 5.29 31.79 0.17 -3.44 16 7 C -0.14 -5.09 6.47 31.99 0.21 -4.88 16 8 C 0.18 8.96 5.40 86.86 0.47 9.42 16 9 N -0.59 -28.82 1.04 -644.49 -0.67 -29.49 16 10 C -0.21 -11.26 9.33 84.03 0.78 -10.47 16 11 H 0.07 3.75 7.41 -2.91 -0.02 3.73 16 12 C -0.07 -3.79 5.47 84.86 0.46 -3.33 16 13 N -0.95 -57.57 10.60 21.65 0.23 -57.34 16 14 Si 0.96 46.80 29.55 68.60 2.03 48.83 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 17 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 18 H 0.05 1.82 6.37 -2.39 -0.02 1.80 16 19 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 20 H 0.03 1.37 7.28 -2.39 -0.02 1.36 16 21 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.03 1.33 7.63 -2.39 -0.02 1.32 16 24 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.06 1.85 6.03 -2.39 -0.01 1.83 16 26 H 0.03 1.39 7.21 -2.39 -0.02 1.38 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.07 2.16 6.11 -2.39 -0.01 2.14 16 29 H 0.09 2.33 7.34 -2.39 -0.02 2.31 16 30 H 0.07 2.43 5.97 -2.39 -0.01 2.42 16 31 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.02 1.35 6.98 -2.39 -0.02 1.33 16 33 H -0.01 -0.53 8.04 -2.39 -0.02 -0.55 16 34 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -62.42 256.03 6.31 -56.11 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.05 Total: 4.28 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 3.67 Total: -22.39 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -0.44 Total: -86.83 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -62.42 6.31 -56.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721220230.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.086 kcal (2) G-P(sol) polarization free energy of solvation -62.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds