Wall clock time and date at job start Mon Mar 30 2020 01:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46973 * 2 1 4 4 N 1.46908 * 115.54933 * 295.19700 * 3 2 1 5 5 C 1.46895 * 110.99899 * 268.30410 * 4 3 2 6 6 H 1.09002 * 109.47110 * 337.58659 * 5 4 3 7 7 C 1.53001 * 109.47169 * 97.58940 * 5 4 3 8 8 C 1.52999 * 109.47042 * 217.58968 * 5 4 3 9 9 C 1.50701 * 109.47296 * 65.00066 * 8 5 4 10 10 H 1.08000 * 119.99969 * 359.97438 * 9 8 5 11 11 C 1.37879 * 120.00286 * 180.02562 * 9 8 5 12 12 N 1.31517 * 119.99631 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00139 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46884 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47124 * 120.00000 * 13 11 9 16 16 H 1.48504 * 109.47219 * 239.99953 * 13 11 9 17 17 C 1.52999 * 117.52009 * 80.89720 * 3 2 1 18 18 C 1.53000 * 117.50025 * 149.52808 * 3 2 1 19 19 H 1.09006 * 109.47031 * 52.87738 * 1 2 3 20 20 H 1.09006 * 109.46954 * 172.87358 * 1 2 3 21 21 H 1.08998 * 109.47208 * 292.87597 * 1 2 3 22 22 H 1.09004 * 109.47268 * 240.00137 * 2 1 3 23 23 H 1.08993 * 109.47328 * 119.99546 * 2 1 3 24 24 H 1.00899 * 110.99593 * 144.34750 * 4 3 2 25 25 H 1.08991 * 109.47276 * 299.99555 * 7 5 4 26 26 H 1.09003 * 109.46906 * 60.00171 * 7 5 4 27 27 H 1.09004 * 109.46864 * 179.97438 * 7 5 4 28 28 H 1.08995 * 109.47057 * 304.99941 * 8 5 4 29 29 H 1.09001 * 109.47443 * 184.99660 * 8 5 4 30 30 H 0.97003 * 119.99747 * 180.02562 * 12 11 9 31 31 H 1.09003 * 117.50144 * 214.97381 * 17 3 2 32 32 H 1.08994 * 117.49665 * 359.97438 * 17 3 2 33 33 H 1.08997 * 117.49589 * 359.97438 * 18 3 2 34 34 H 1.08999 * 117.50028 * 144.99599 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.7191 2.2280 -1.1993 5 6 2.7928 2.1280 -2.1968 6 1 3.7229 1.8471 -1.7026 7 6 2.4265 1.0664 -3.2358 8 6 2.9721 3.4800 -2.8904 9 6 3.4519 4.4987 -1.8888 10 1 3.6125 4.2108 -0.8604 11 6 3.6848 5.7986 -2.2852 12 7 3.4887 6.1493 -3.5375 13 14 4.2789 7.0614 -1.0436 14 1 4.4209 6.4182 0.2873 15 1 5.5939 7.5997 -1.4755 16 1 3.2949 8.1702 -0.9558 17 6 2.0732 2.1806 1.3398 18 6 3.3782 1.7187 0.6882 19 1 -0.3633 0.6203 -0.8195 20 1 -0.3633 -1.0198 -0.1275 21 1 -0.3633 0.3995 0.9468 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8899 24 1 1.5345 3.1911 -0.9620 25 1 2.2989 0.1033 -2.7418 26 1 1.4965 1.3474 -3.7300 27 1 3.2231 0.9926 -3.9763 28 1 2.0188 3.8028 -3.3088 29 1 3.7060 3.3835 -3.6904 30 1 3.6530 7.0637 -3.8165 31 1 1.8570 3.2489 1.3314 32 1 1.7313 1.6387 2.2215 33 1 3.8951 0.8728 1.1413 34 1 4.0206 2.4832 0.2512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829188410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:51 Heat of formation + Delta-G solvation = 0.479584 kcal Electronic energy + Delta-G solvation = -13081.859869 eV Core-core repulsion = 11014.531270 eV Total energy + Delta-G solvation = -2067.328599 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.56023 -34.71672 -32.30241 -31.52777 -28.50718 -27.33855 -23.66455 -22.98624 -22.09120 -19.53743 -18.50839 -16.41357 -15.46889 -15.00855 -14.47422 -14.08155 -13.29629 -13.28628 -12.67280 -12.10844 -11.87967 -11.69526 -11.37927 -11.28512 -11.04159 -10.90922 -10.79362 -10.69692 -10.51455 -10.36544 -9.79554 -9.39286 -9.07415 -9.00634 -8.41351 -7.59403 -6.04209 -4.07353 3.27163 3.35444 3.38240 4.16728 4.41625 4.86424 5.09221 5.27851 5.32524 5.33952 5.71162 5.81283 5.85880 5.99567 6.05587 6.16258 6.23389 6.31780 6.34038 6.42018 6.55283 6.63229 6.69425 6.70826 6.96755 7.02924 7.55826 7.64521 7.96246 8.12474 8.31544 8.37378 8.99749 9.57206 11.06637 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038908 B = 0.010725 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.470127 B = 2610.216258 C = 3072.113357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 C 0.062 3.938 4 N -0.646 5.646 5 C 0.086 3.914 6 H 0.042 0.958 7 C -0.134 4.134 8 C 0.014 3.986 9 C -0.523 4.523 10 H 0.054 0.946 11 C 0.060 3.940 12 N -0.890 5.890 13 Si 0.888 3.112 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.185 4.185 18 C -0.211 4.211 19 H 0.069 0.931 20 H 0.042 0.958 21 H 0.045 0.955 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.356 0.644 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.260 0.740 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -9.356 6.561 11.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.031 4.031 4 N -0.279 5.279 5 C -0.023 4.023 6 H 0.060 0.940 7 C -0.192 4.192 8 C -0.023 4.023 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.141 4.141 12 N -0.529 5.529 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.223 4.223 18 C -0.250 4.250 19 H 0.088 0.912 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.177 0.823 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.331 -9.683 6.127 11.933 hybrid contribution 1.151 1.474 1.093 2.166 sum -2.180 -8.210 7.221 11.148 Atomic orbital electron populations 1.21611 0.95450 1.00537 1.02208 1.20920 0.96174 0.92924 1.00913 1.21762 0.97607 0.94919 0.88842 1.60324 1.42262 1.16828 1.08462 1.21691 0.91166 0.97433 0.92008 0.93987 1.21823 1.00781 0.98067 0.98485 1.19398 0.97536 0.89522 0.95859 1.21243 1.44985 0.94343 0.95541 0.92829 1.24998 0.95537 0.98525 0.95081 1.69976 1.48888 1.18378 1.15676 0.86607 0.78485 0.81703 0.81637 1.19826 1.21054 1.20987 1.23226 1.02014 1.00726 0.96337 1.23546 0.92051 1.03800 1.05603 0.91209 0.93879 0.93572 0.91651 0.92803 0.82270 0.94220 0.92974 0.93644 0.95831 0.96074 0.93020 0.88825 0.89358 0.89694 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.90 37.16 0.37 -1.49 16 2 C -0.07 -1.01 6.00 -26.73 -0.16 -1.17 16 3 C 0.06 1.02 1.86 -131.60 -0.25 0.78 16 4 N -0.65 -12.48 6.23 -93.04 -0.58 -13.06 16 5 C 0.09 1.79 2.49 -67.72 -0.17 1.62 16 6 H 0.04 0.91 6.25 -51.93 -0.32 0.58 16 7 C -0.13 -2.45 9.52 37.16 0.35 -2.10 16 8 C 0.01 0.36 4.47 -27.88 -0.12 0.24 16 9 C -0.52 -14.21 8.12 -34.44 -0.28 -14.49 16 10 H 0.05 1.42 6.55 -52.49 -0.34 1.08 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 13 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 C -0.19 -2.90 9.94 -26.73 -0.27 -3.17 16 18 C -0.21 -3.52 8.97 -26.73 -0.24 -3.76 16 19 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 20 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.96 6.61 -51.93 -0.34 0.61 16 23 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 24 H 0.36 7.56 7.06 -39.29 -0.28 7.29 16 25 H 0.04 0.65 6.61 -51.93 -0.34 0.31 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.09 1.56 8.05 -51.93 -0.42 1.14 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.10 2.00 6.37 -51.93 -0.33 1.67 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -28.13 274.03 -7.32 -35.45 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.73 Total: 4.69 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: -0.86 Total: -21.94 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.16 Total: -38.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.13 -7.32 -35.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.933 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds