Wall clock time and date at job start Mon Mar 30 2020 01:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46973 * 2 1 4 4 N 1.46908 * 115.54933 * 295.19700 * 3 2 1 5 5 C 1.46895 * 110.99899 * 268.30410 * 4 3 2 6 6 H 1.09002 * 109.47110 * 337.58659 * 5 4 3 7 7 C 1.53001 * 109.47169 * 97.58940 * 5 4 3 8 8 C 1.52999 * 109.47042 * 217.58968 * 5 4 3 9 9 C 1.50701 * 109.47296 * 65.00066 * 8 5 4 10 10 H 1.08000 * 119.99969 * 359.97438 * 9 8 5 11 11 C 1.37879 * 120.00286 * 180.02562 * 9 8 5 12 12 N 1.31517 * 119.99631 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00139 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46884 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47124 * 120.00000 * 13 11 9 16 16 H 1.48504 * 109.47219 * 239.99953 * 13 11 9 17 17 C 1.52999 * 117.52009 * 80.89720 * 3 2 1 18 18 C 1.53000 * 117.50025 * 149.52808 * 3 2 1 19 19 H 1.09006 * 109.47031 * 52.87738 * 1 2 3 20 20 H 1.09006 * 109.46954 * 172.87358 * 1 2 3 21 21 H 1.08998 * 109.47208 * 292.87597 * 1 2 3 22 22 H 1.09004 * 109.47268 * 240.00137 * 2 1 3 23 23 H 1.08993 * 109.47328 * 119.99546 * 2 1 3 24 24 H 1.00899 * 110.99593 * 144.34750 * 4 3 2 25 25 H 1.08991 * 109.47276 * 299.99555 * 7 5 4 26 26 H 1.09003 * 109.46906 * 60.00171 * 7 5 4 27 27 H 1.09004 * 109.46864 * 179.97438 * 7 5 4 28 28 H 1.08995 * 109.47057 * 304.99941 * 8 5 4 29 29 H 1.09001 * 109.47443 * 184.99660 * 8 5 4 30 30 H 0.97003 * 119.99747 * 180.02562 * 12 11 9 31 31 H 1.09003 * 117.50144 * 214.97381 * 17 3 2 32 32 H 1.08994 * 117.49665 * 359.97438 * 17 3 2 33 33 H 1.08997 * 117.49589 * 359.97438 * 18 3 2 34 34 H 1.08999 * 117.50028 * 144.99599 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.7191 2.2280 -1.1993 5 6 2.7928 2.1280 -2.1968 6 1 3.7229 1.8471 -1.7026 7 6 2.4265 1.0664 -3.2358 8 6 2.9721 3.4800 -2.8904 9 6 3.4519 4.4987 -1.8888 10 1 3.6125 4.2108 -0.8604 11 6 3.6848 5.7986 -2.2852 12 7 3.4887 6.1493 -3.5375 13 14 4.2789 7.0614 -1.0436 14 1 4.4209 6.4182 0.2873 15 1 5.5939 7.5997 -1.4755 16 1 3.2949 8.1702 -0.9558 17 6 2.0732 2.1806 1.3398 18 6 3.3782 1.7187 0.6882 19 1 -0.3633 0.6203 -0.8195 20 1 -0.3633 -1.0198 -0.1275 21 1 -0.3633 0.3995 0.9468 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8899 24 1 1.5345 3.1911 -0.9620 25 1 2.2989 0.1033 -2.7418 26 1 1.4965 1.3474 -3.7300 27 1 3.2231 0.9926 -3.9763 28 1 2.0188 3.8028 -3.3088 29 1 3.7060 3.3835 -3.6904 30 1 3.6530 7.0637 -3.8165 31 1 1.8570 3.2489 1.3314 32 1 1.7313 1.6387 2.2215 33 1 3.8951 0.8728 1.1413 34 1 4.0206 2.4832 0.2512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188410.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:51 Heat of formation + Delta-G solvation = -16.419959 kcal Electronic energy + Delta-G solvation = -13082.592688 eV Core-core repulsion = 11014.531270 eV Total energy + Delta-G solvation = -2068.061419 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.95907 -36.44510 -34.34096 -32.63843 -30.15265 -29.23856 -25.19607 -24.59592 -23.43983 -21.14928 -19.92065 -18.54053 -16.93382 -16.72246 -16.10897 -15.52586 -14.85799 -14.50421 -14.38642 -13.71142 -13.46194 -13.27035 -13.05609 -12.81047 -12.64665 -12.51045 -12.35273 -12.26574 -12.04930 -11.76776 -11.37648 -11.09152 -10.97724 -10.60096 -10.48075 -9.14131 -8.21501 -6.31523 1.35493 1.36800 1.48279 2.37226 2.85754 3.10488 3.44347 3.86179 4.03256 4.06367 4.38155 4.54706 4.66549 4.68034 4.74990 4.78387 4.80521 4.98937 5.04988 5.11582 5.22055 5.26235 5.29663 5.35425 5.49374 5.52721 5.56115 5.65015 5.83714 6.20938 6.47226 6.66263 6.84394 7.37311 8.90301 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038908 B = 0.010725 C = 0.009112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.470127 B = 2610.216258 C = 3072.113357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C 0.051 3.949 4 N -0.646 5.646 5 C 0.097 3.903 6 H 0.036 0.964 7 C -0.126 4.126 8 C 0.022 3.978 9 C -0.529 4.529 10 H 0.058 0.942 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.958 3.042 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.279 1.279 17 C -0.174 4.174 18 C -0.216 4.216 19 H 0.047 0.953 20 H 0.062 0.938 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.341 0.659 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.048 0.952 28 H -0.004 1.004 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -10.530 8.497 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.042 4.042 4 N -0.277 5.277 5 C -0.012 4.012 6 H 0.054 0.946 7 C -0.184 4.184 8 C -0.016 4.016 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.194 4.194 12 N -0.570 5.570 13 Si 0.783 3.217 14 H -0.189 1.189 15 H -0.207 1.207 16 H -0.205 1.205 17 C -0.212 4.212 18 C -0.254 4.254 19 H 0.066 0.934 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.160 0.840 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.014 0.986 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.467 -10.881 8.072 13.985 hybrid contribution 1.187 1.823 0.485 2.229 sum -2.280 -9.059 8.557 12.668 Atomic orbital electron populations 1.21569 0.94700 1.01412 1.01727 1.20952 0.96759 0.90949 1.01874 1.22037 0.97924 0.96093 0.88122 1.60385 1.41425 1.16106 1.09751 1.21481 0.91680 0.95375 0.92705 0.94619 1.21742 1.00568 0.98211 0.97895 1.19266 0.95008 0.92141 0.95144 1.21548 1.44298 0.94886 0.95944 0.92400 1.25880 0.95799 1.00819 0.96930 1.70104 1.50206 1.18996 1.17690 0.85506 0.77890 0.78930 0.79364 1.18861 1.20687 1.20475 1.23285 1.00848 1.00211 0.96816 1.23489 0.91988 1.03868 1.06096 0.93370 0.91875 0.92848 0.92052 0.90442 0.83969 0.91830 0.93463 0.93322 0.98612 0.98863 0.92872 0.90295 0.86334 0.87261 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.90 71.98 0.71 -2.50 16 2 C -0.07 -1.70 6.00 30.59 0.18 -1.52 16 3 C 0.05 1.59 1.86 3.53 0.01 1.59 16 4 N -0.65 -24.79 6.23 -448.28 -2.79 -27.58 16 5 C 0.10 4.07 2.49 44.92 0.11 4.18 16 6 H 0.04 1.54 6.25 -2.39 -0.01 1.53 16 7 C -0.13 -4.55 9.52 71.98 0.69 -3.87 16 8 C 0.02 1.15 4.47 29.85 0.13 1.29 16 9 C -0.53 -29.32 8.12 25.60 0.21 -29.11 16 10 H 0.06 3.10 6.55 -2.91 -0.02 3.09 16 11 C 0.00 0.22 5.46 84.65 0.46 0.68 16 12 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 13 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 C -0.17 -5.05 9.94 30.59 0.30 -4.74 16 18 C -0.22 -6.80 8.97 30.59 0.27 -6.53 16 19 H 0.05 1.34 7.87 -2.38 -0.02 1.32 16 20 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.06 1.60 6.61 -2.39 -0.02 1.59 16 23 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 24 H 0.34 14.70 7.06 -89.70 -0.63 14.07 16 25 H 0.06 1.98 6.61 -2.39 -0.02 1.97 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.08 2.53 8.05 -2.39 -0.02 2.51 16 32 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.07 2.70 6.37 -2.39 -0.02 2.69 16 Total: -1.00 -60.78 274.03 3.02 -57.76 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.42 Total: 20.13 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 3.08 Total: -40.53 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.51 Total: -83.75 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.78 3.02 -57.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188410.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.340 kcal (2) G-P(sol) polarization free energy of solvation -60.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds