Wall clock time and date at job start Mon Mar 30 2020 01:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 115.54537 * 2 1 4 4 C 1.53065 * 117.51462 * 145.72194 * 2 1 3 5 5 C 1.53001 * 59.98698 * 107.47756 * 4 2 1 6 6 H 1.08992 * 117.49862 * 252.49990 * 5 4 2 7 7 N 1.46495 * 117.49508 * 107.49452 * 5 4 2 8 8 C 1.37495 * 119.99440 * 136.25703 * 7 5 4 9 9 N 1.30340 * 119.99826 * 0.02562 * 8 7 5 10 10 N 1.37478 * 119.99534 * 180.02562 * 8 7 5 11 11 C 1.46505 * 119.99577 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47064 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47171 * 89.99544 * 16 14 12 18 18 H 1.48500 * 109.46632 * 209.99795 * 16 14 12 19 19 H 1.48494 * 109.47053 * 329.99231 * 16 14 12 20 20 H 1.08995 * 109.47136 * 205.66909 * 1 2 3 21 21 H 1.08999 * 109.47439 * 325.67139 * 1 2 3 22 22 H 1.09001 * 109.46961 * 85.66752 * 1 2 3 23 23 H 1.09006 * 117.49501 * 359.97438 * 4 2 1 24 24 H 1.09001 * 117.51418 * 214.95837 * 4 2 1 25 25 H 0.96990 * 120.00944 * 316.26239 * 7 5 4 26 26 H 0.97002 * 120.00211 * 359.97438 * 9 8 7 27 27 H 0.96996 * 120.00817 * 359.97438 * 10 8 7 28 28 H 1.09002 * 109.47068 * 299.99813 * 11 10 8 29 29 H 1.09001 * 109.47372 * 59.99900 * 11 10 8 30 30 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2372 -1.1217 0.7646 5 6 2.2365 -1.1207 -0.7654 6 1 1.6113 -1.8580 -1.2689 7 7 3.4930 -0.7898 -1.4421 8 6 3.9074 -1.5313 -2.5232 9 7 3.1822 -2.5282 -2.9463 10 7 5.0868 -1.2211 -3.1579 11 6 5.5282 -2.0109 -4.3102 12 6 6.8395 -1.4690 -4.8180 13 1 7.2980 -0.6209 -4.3313 14 6 7.4533 -2.0553 -5.9045 15 7 6.8947 -3.0877 -6.4975 16 14 9.0792 -1.3840 -6.5335 17 1 10.1993 -2.0725 -5.8432 18 1 9.1793 -1.6199 -7.9962 19 1 9.1512 0.0740 -6.2612 20 1 -0.3633 -0.9262 0.4451 21 1 -0.3634 0.8486 0.5795 22 1 -0.3633 0.0776 -1.0247 23 1 1.6121 -1.8594 1.2679 24 1 3.1725 -0.8763 1.2677 25 1 4.0325 -0.0478 -1.1275 26 1 2.3502 -2.7473 -2.4982 27 1 5.6264 -0.4790 -2.8433 28 1 5.6562 -3.0510 -4.0103 29 1 4.7799 -1.9501 -5.1005 30 1 7.3263 -3.5000 -7.2621 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864465035.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:12 Heat of formation + Delta-G solvation = 50.767036 kcal Electronic energy + Delta-G solvation = -11960.205603 eV Core-core repulsion = 9791.517288 eV Total energy + Delta-G solvation = -2168.688315 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.78386 -36.54260 -33.51767 -31.82358 -30.20236 -28.25527 -26.73237 -22.91466 -21.62529 -20.77061 -19.50251 -17.76538 -16.36562 -15.97419 -14.75505 -14.35218 -14.01297 -13.55207 -13.36606 -12.99025 -12.78132 -12.07974 -11.85860 -11.81039 -11.49852 -10.90722 -10.82569 -10.27398 -10.17072 -10.06267 -9.23957 -8.55901 -8.49759 -7.83264 -7.03116 -6.05149 -4.10648 3.30064 3.30570 3.36826 3.40343 3.58059 4.05106 4.39497 4.66429 4.72160 4.87936 4.90846 5.15634 5.30550 5.53072 5.60864 5.67578 5.84156 5.86861 6.11676 6.57528 7.02941 7.31486 7.65613 7.80505 7.99643 8.13875 8.35795 8.91307 8.95753 9.52062 9.72629 11.04926 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.089642 B = 0.005880 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.280127 B = 4761.118581 C = 4909.134936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 H 0.103 0.897 4 C -0.196 4.196 5 C 0.106 3.894 6 H 0.127 0.873 7 N -0.753 5.753 8 C 0.630 3.370 9 N -0.829 5.829 10 N -0.714 5.714 11 C 0.280 3.720 12 C -0.542 4.542 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.901 3.099 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.098 0.902 24 H 0.094 0.906 25 H 0.386 0.614 26 H 0.321 0.679 27 H 0.389 0.611 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 6.431 12.497 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.189 4.189 3 H 0.121 0.879 4 C -0.235 4.235 5 C -0.003 4.003 6 H 0.144 0.856 7 N -0.396 5.396 8 C 0.263 3.737 9 N -0.479 5.479 10 N -0.354 5.354 11 C 0.159 3.841 12 C -0.580 4.580 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.117 0.883 24 H 0.112 0.888 25 H 0.219 0.781 26 H 0.137 0.863 27 H 0.223 0.777 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.406 5.398 11.377 15.140 hybrid contribution 0.844 1.358 0.790 1.784 sum -7.562 6.756 12.167 15.839 Atomic orbital electron populations 1.21337 0.92470 1.01920 1.02053 1.22813 0.95639 0.95129 1.05279 0.87894 1.23657 1.02559 1.01462 0.95843 1.21314 0.88229 1.00368 0.90393 0.85576 1.44972 1.23702 1.36942 1.34013 1.19207 0.87523 0.85735 0.81198 1.70002 1.15293 1.22602 1.40030 1.44665 1.19173 1.36649 1.34918 1.18871 0.93449 0.90586 0.81223 1.21308 1.06151 1.15946 1.14631 0.92266 1.24914 0.97900 0.94893 0.96264 1.69989 1.38910 1.21655 1.21726 0.86465 0.83480 0.79173 0.78040 1.20580 1.21076 1.19897 0.92392 0.92197 0.92022 0.88349 0.88765 0.78051 0.86261 0.77744 0.95817 0.95821 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.19 37.16 0.38 -0.64 16 2 C -0.17 -1.69 6.33 -90.58 -0.57 -2.27 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.20 -2.01 10.11 -26.70 -0.27 -2.28 16 5 C 0.11 1.34 6.11 -67.93 -0.41 0.93 16 6 H 0.13 1.67 6.10 -51.93 -0.32 1.35 16 7 N -0.75 -11.38 5.68 -55.29 -0.31 -11.69 16 8 C 0.63 12.75 8.71 -320.08 -2.79 9.96 16 9 N -0.83 -18.34 13.21 30.15 0.40 -17.94 16 10 N -0.71 -15.73 5.66 -62.97 -0.36 -16.08 16 11 C 0.28 7.65 5.42 -5.19 -0.03 7.62 16 12 C -0.54 -15.15 9.28 -34.44 -0.32 -15.47 16 13 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 14 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 16 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.39 5.04 8.92 -40.82 -0.36 4.67 16 26 H 0.32 6.18 6.36 -40.82 -0.26 5.92 16 27 H 0.39 7.54 8.42 -40.82 -0.34 7.20 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 260.81 15.07 3.93 3.93 Total: -1.00 -31.48 260.81 -8.92 -40.40 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.18 Total: 11.45 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -4.11 Total: -0.44 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: 0.46 Total: -71.64 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.48 -8.92 -40.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864465035.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.167 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds