Wall clock time and date at job start Mon Mar 30 2020 01:49:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 115.56186 * 2 1
4 4 C 1.53079 * 117.48997 * 214.29554 * 2 1 3
5 5 C 1.53000 * 117.49984 * 145.69208 * 2 1 3
6 6 H 1.08999 * 117.49550 * 359.97438 * 5 2 1
7 7 N 1.46499 * 117.49897 * 214.97738 * 5 2 1
8 8 C 1.37481 * 119.99674 * 155.36438 * 7 5 2
9 9 N 1.30344 * 120.00310 * 359.72079 * 8 7 5
10 10 N 1.37483 * 119.99878 * 179.72532 * 8 7 5
11 11 C 1.46493 * 120.00311 * 180.02562 * 10 8 7
12 12 C 1.50701 * 109.47646 * 180.02562 * 11 10 8
13 13 H 1.07999 * 119.99301 * 359.97438 * 12 11 10
14 14 C 1.37876 * 120.00193 * 179.97438 * 12 11 10
15 15 N 1.31514 * 119.99993 * 0.02562 * 14 12 11
16 16 Si 1.86802 * 119.99723 * 179.97438 * 14 12 11
17 17 H 1.48497 * 109.47273 * 0.02562 * 16 14 12
18 18 H 1.48502 * 109.47023 * 120.00204 * 16 14 12
19 19 H 1.48500 * 109.47272 * 239.99862 * 16 14 12
20 20 H 1.09003 * 109.47030 * 274.31033 * 1 2 3
21 21 H 1.08998 * 109.47038 * 34.30493 * 1 2 3
22 22 H 1.09005 * 109.47212 * 154.30880 * 1 2 3
23 23 H 1.09000 * 117.50899 * 145.04054 * 4 2 1
24 24 H 1.08993 * 117.49528 * 359.97438 * 4 2 1
25 25 H 0.97001 * 119.99790 * 335.08235 * 7 5 2
26 26 H 0.96995 * 120.00028 * 179.97438 * 9 8 7
27 27 H 0.97001 * 119.99646 * 359.97438 * 10 8 7
28 28 H 1.09004 * 109.46794 * 299.99905 * 11 10 8
29 29 H 1.09000 * 109.47559 * 59.99429 * 11 10 8
30 30 H 0.96996 * 119.99510 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0003 0.9833 0.0000
4 6 2.2366 -1.1219 -0.7652
5 6 2.2365 -1.1210 0.7649
6 1 1.6112 -1.8583 1.2685
7 7 3.4933 -0.7907 1.4413
8 6 3.9106 -1.5360 2.5186
9 7 3.1855 -2.5331 2.9414
10 7 5.0929 -1.2295 3.1498
11 6 5.5380 -2.0240 4.2973
12 6 6.8519 -1.4854 4.8020
13 1 7.3097 -0.6365 4.3162
14 6 7.4693 -2.0765 5.8839
15 7 6.9119 -3.1106 6.4751
16 14 9.0983 -1.4093 6.5089
17 1 9.5106 -0.2504 5.6769
18 1 8.9464 -0.9752 7.9209
19 1 10.1328 -2.4715 6.4263
20 1 -0.3633 0.0772 1.0248
21 1 -0.3633 0.8489 -0.5792
22 1 -0.3634 -0.9261 -0.4455
23 1 3.1719 -0.8766 -1.2684
24 1 1.6112 -1.8596 -1.2678
25 1 4.0329 -0.0486 1.1266
26 1 3.4802 -3.0592 3.7012
27 1 5.6327 -0.4876 2.8349
28 1 4.7929 -1.9653 5.0908
29 1 5.6636 -3.0631 3.9931
30 1 7.3462 -3.5261 7.2364
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000864465037.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:49:15
Heat of formation + Delta-G solvation = 44.264525 kcal
Electronic energy + Delta-G solvation = -11960.598335 eV
Core-core repulsion = 9791.628049 eV
Total energy + Delta-G solvation = -2168.970285 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 197.122 amu
Computer time = 0.14 seconds
Orbital eigenvalues (eV)
-38.51318 -36.69821 -33.47204 -31.89156 -30.10458 -28.15068 -26.77600 -22.98650
-21.51051 -20.56328 -19.55930 -17.60334 -16.35023 -15.73389 -14.85146 -14.34010
-13.90707 -13.55025 -13.37970 -12.91943 -12.72035 -12.02221 -11.97378 -11.77199
-11.38483 -10.98217 -10.93539 -10.30029 -10.17344 -9.89147 -9.41953 -8.67885
-8.55700 -7.79819 -7.08614 -6.21312 -4.26931 3.21526 3.28132 3.31078
3.39410 3.71836 4.16543 4.29181 4.87508 4.97733 5.00628 5.14337
5.15921 5.31677 5.76151 5.77910 5.84315 6.00128 6.08493 6.27570
6.62891 7.05890 7.41076 7.45399 7.55080 7.76540 7.93058 8.28921
8.69508 9.02330 9.39120 9.63401 10.89355
Molecular weight = 197.12amu
Principal moments of inertia in cm(-1)
A = 0.089497 B = 0.005887 C = 0.005708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 312.784947 B = 4754.721572 C = 4904.211819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.179 4.179
3 H 0.099 0.901
4 C -0.203 4.203
5 C 0.134 3.866
6 H 0.142 0.858
7 N -0.707 5.707
8 C 0.629 3.371
9 N -0.848 5.848
10 N -0.761 5.761
11 C 0.261 3.739
12 C -0.537 4.537
13 H 0.063 0.937
14 C 0.063 3.937
15 N -0.887 5.887
16 Si 0.905 3.095
17 H -0.272 1.272
18 H -0.282 1.282
19 H -0.282 1.282
20 H 0.060 0.940
21 H 0.056 0.944
22 H 0.056 0.944
23 H 0.090 0.910
24 H 0.096 0.904
25 H 0.396 0.604
26 H 0.343 0.657
27 H 0.380 0.620
28 H 0.019 0.981
29 H 0.019 0.981
30 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.175 6.017 -10.912 14.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.199 4.199
3 H 0.118 0.882
4 C -0.243 4.243
5 C 0.026 3.974
6 H 0.159 0.841
7 N -0.347 5.347
8 C 0.261 3.739
9 N -0.499 5.499
10 N -0.403 5.403
11 C 0.139 3.861
12 C -0.575 4.575
13 H 0.081 0.919
14 C -0.140 4.140
15 N -0.525 5.525
16 Si 0.732 3.268
17 H -0.197 1.197
18 H -0.208 1.208
19 H -0.208 1.208
20 H 0.079 0.921
21 H 0.075 0.925
22 H 0.075 0.925
23 H 0.109 0.891
24 H 0.115 0.885
25 H 0.230 0.770
26 H 0.160 0.840
27 H 0.211 0.789
28 H 0.037 0.963
29 H 0.037 0.963
30 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -8.131 5.265 -10.908 14.588
hybrid contribution 2.266 0.976 0.705 2.566
sum -5.865 6.242 -10.203 13.321
Atomic orbital electron populations
1.21303 0.92650 1.01654 1.01920 1.22848 0.95631 0.95115 1.06294
0.88238 1.23662 1.02320 1.01456 0.96827 1.21441 0.87281 0.99289
0.89371 0.84062 1.43088 1.23959 1.35261 1.32418 1.18767 0.82621
0.88046 0.84425 1.69418 1.37250 1.14877 1.28393 1.45989 1.21520
1.37209 1.35631 1.18948 0.94699 0.90654 0.81758 1.21184 1.05432
1.15984 1.14936 0.91914 1.24947 0.98182 0.94779 0.96141 1.69963
1.39104 1.21461 1.21976 0.86338 0.82868 0.78869 0.78713 1.19671
1.20767 1.20763 0.92084 0.92535 0.92464 0.89144 0.88533 0.76955
0.83996 0.78854 0.96339 0.96340 0.92474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.13 10.19 37.16 0.38 -0.75 16
2 C -0.18 -1.98 6.33 -90.58 -0.57 -2.55 16
3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16
4 C -0.20 -2.32 10.11 -26.69 -0.27 -2.59 16
5 C 0.13 1.89 6.17 -67.93 -0.42 1.48 16
6 H 0.14 2.27 7.32 -51.93 -0.38 1.89 16
7 N -0.71 -11.15 5.68 -55.28 -0.31 -11.47 16
8 C 0.63 12.71 8.71 -320.09 -2.79 9.92 16
9 N -0.85 -18.65 12.74 30.15 0.38 -18.26 16
10 N -0.76 -16.29 5.66 -62.98 -0.36 -16.65 16
11 C 0.26 6.76 4.77 -5.20 -0.02 6.74 16
12 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16
13 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16
14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
15 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16
16 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16
17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
20 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
22 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16
23 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16
24 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16
25 H 0.40 5.25 8.92 -40.82 -0.36 4.89 16
26 H 0.34 8.06 7.14 -40.82 -0.29 7.76 16
27 H 0.38 7.33 8.42 -40.82 -0.34 6.99 16
28 H 0.02 0.52 7.97 -51.93 -0.41 0.11 16
29 H 0.02 0.52 7.97 -51.93 -0.41 0.11 16
30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16
LS Contribution 261.41 15.07 3.94 3.94
Total: -1.00 -29.46 261.41 -9.01 -38.47
By element:
Atomic # 1 Polarization: 18.43 SS G_CDS: -4.26 Total: 14.17 kcal
Atomic # 6 Polarization: 3.08 SS G_CDS: -4.11 Total: -1.04 kcal
Atomic # 7 Polarization: -71.85 SS G_CDS: 0.45 Total: -71.40 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal
Total LS contribution 3.94 Total: 3.94 kcal
Total: -29.46 -9.01 -38.47 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000864465037.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.734 kcal
(2) G-P(sol) polarization free energy of solvation -29.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.271 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.265 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.14 seconds