Wall clock time and date at job start Mon Mar 30 2020 01:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 115.56186 * 2 1 4 4 C 1.53079 * 117.48997 * 214.29554 * 2 1 3 5 5 C 1.53000 * 117.49984 * 145.69208 * 2 1 3 6 6 H 1.08999 * 117.49550 * 359.97438 * 5 2 1 7 7 N 1.46499 * 117.49897 * 214.97738 * 5 2 1 8 8 C 1.37481 * 119.99674 * 155.36438 * 7 5 2 9 9 N 1.30344 * 120.00310 * 359.72079 * 8 7 5 10 10 N 1.37483 * 119.99878 * 179.72532 * 8 7 5 11 11 C 1.46493 * 120.00311 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47646 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99301 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00193 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99993 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99723 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47273 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47023 * 120.00204 * 16 14 12 19 19 H 1.48500 * 109.47272 * 239.99862 * 16 14 12 20 20 H 1.09003 * 109.47030 * 274.31033 * 1 2 3 21 21 H 1.08998 * 109.47038 * 34.30493 * 1 2 3 22 22 H 1.09005 * 109.47212 * 154.30880 * 1 2 3 23 23 H 1.09000 * 117.50899 * 145.04054 * 4 2 1 24 24 H 1.08993 * 117.49528 * 359.97438 * 4 2 1 25 25 H 0.97001 * 119.99790 * 335.08235 * 7 5 2 26 26 H 0.96995 * 120.00028 * 179.97438 * 9 8 7 27 27 H 0.97001 * 119.99646 * 359.97438 * 10 8 7 28 28 H 1.09004 * 109.46794 * 299.99905 * 11 10 8 29 29 H 1.09000 * 109.47559 * 59.99429 * 11 10 8 30 30 H 0.96996 * 119.99510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1219 -0.7652 5 6 2.2365 -1.1210 0.7649 6 1 1.6112 -1.8583 1.2685 7 7 3.4933 -0.7907 1.4413 8 6 3.9106 -1.5360 2.5186 9 7 3.1855 -2.5331 2.9414 10 7 5.0929 -1.2295 3.1498 11 6 5.5380 -2.0240 4.2973 12 6 6.8519 -1.4854 4.8020 13 1 7.3097 -0.6365 4.3162 14 6 7.4693 -2.0765 5.8839 15 7 6.9119 -3.1106 6.4751 16 14 9.0983 -1.4093 6.5089 17 1 9.5106 -0.2504 5.6769 18 1 8.9464 -0.9752 7.9209 19 1 10.1328 -2.4715 6.4263 20 1 -0.3633 0.0772 1.0248 21 1 -0.3633 0.8489 -0.5792 22 1 -0.3634 -0.9261 -0.4455 23 1 3.1719 -0.8766 -1.2684 24 1 1.6112 -1.8596 -1.2678 25 1 4.0329 -0.0486 1.1266 26 1 3.4802 -3.0592 3.7012 27 1 5.6327 -0.4876 2.8349 28 1 4.7929 -1.9653 5.0908 29 1 5.6636 -3.0631 3.9931 30 1 7.3462 -3.5261 7.2364 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864465037.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:15 Heat of formation + Delta-G solvation = 44.264525 kcal Electronic energy + Delta-G solvation = -11960.598335 eV Core-core repulsion = 9791.628049 eV Total energy + Delta-G solvation = -2168.970285 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51318 -36.69821 -33.47204 -31.89156 -30.10458 -28.15068 -26.77600 -22.98650 -21.51051 -20.56328 -19.55930 -17.60334 -16.35023 -15.73389 -14.85146 -14.34010 -13.90707 -13.55025 -13.37970 -12.91943 -12.72035 -12.02221 -11.97378 -11.77199 -11.38483 -10.98217 -10.93539 -10.30029 -10.17344 -9.89147 -9.41953 -8.67885 -8.55700 -7.79819 -7.08614 -6.21312 -4.26931 3.21526 3.28132 3.31078 3.39410 3.71836 4.16543 4.29181 4.87508 4.97733 5.00628 5.14337 5.15921 5.31677 5.76151 5.77910 5.84315 6.00128 6.08493 6.27570 6.62891 7.05890 7.41076 7.45399 7.55080 7.76540 7.93058 8.28921 8.69508 9.02330 9.39120 9.63401 10.89355 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.089497 B = 0.005887 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.784947 B = 4754.721572 C = 4904.211819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.179 4.179 3 H 0.099 0.901 4 C -0.203 4.203 5 C 0.134 3.866 6 H 0.142 0.858 7 N -0.707 5.707 8 C 0.629 3.371 9 N -0.848 5.848 10 N -0.761 5.761 11 C 0.261 3.739 12 C -0.537 4.537 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.887 5.887 16 Si 0.905 3.095 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.060 0.940 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.396 0.604 26 H 0.343 0.657 27 H 0.380 0.620 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.175 6.017 -10.912 14.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.199 4.199 3 H 0.118 0.882 4 C -0.243 4.243 5 C 0.026 3.974 6 H 0.159 0.841 7 N -0.347 5.347 8 C 0.261 3.739 9 N -0.499 5.499 10 N -0.403 5.403 11 C 0.139 3.861 12 C -0.575 4.575 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.230 0.770 26 H 0.160 0.840 27 H 0.211 0.789 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.131 5.265 -10.908 14.588 hybrid contribution 2.266 0.976 0.705 2.566 sum -5.865 6.242 -10.203 13.321 Atomic orbital electron populations 1.21303 0.92650 1.01654 1.01920 1.22848 0.95631 0.95115 1.06294 0.88238 1.23662 1.02320 1.01456 0.96827 1.21441 0.87281 0.99289 0.89371 0.84062 1.43088 1.23959 1.35261 1.32418 1.18767 0.82621 0.88046 0.84425 1.69418 1.37250 1.14877 1.28393 1.45989 1.21520 1.37209 1.35631 1.18948 0.94699 0.90654 0.81758 1.21184 1.05432 1.15984 1.14936 0.91914 1.24947 0.98182 0.94779 0.96141 1.69963 1.39104 1.21461 1.21976 0.86338 0.82868 0.78869 0.78713 1.19671 1.20767 1.20763 0.92084 0.92535 0.92464 0.89144 0.88533 0.76955 0.83996 0.78854 0.96339 0.96340 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.19 37.16 0.38 -0.75 16 2 C -0.18 -1.98 6.33 -90.58 -0.57 -2.55 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.20 -2.32 10.11 -26.69 -0.27 -2.59 16 5 C 0.13 1.89 6.17 -67.93 -0.42 1.48 16 6 H 0.14 2.27 7.32 -51.93 -0.38 1.89 16 7 N -0.71 -11.15 5.68 -55.28 -0.31 -11.47 16 8 C 0.63 12.71 8.71 -320.09 -2.79 9.92 16 9 N -0.85 -18.65 12.74 30.15 0.38 -18.26 16 10 N -0.76 -16.29 5.66 -62.98 -0.36 -16.65 16 11 C 0.26 6.76 4.77 -5.20 -0.02 6.74 16 12 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 13 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 16 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 23 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 25 H 0.40 5.25 8.92 -40.82 -0.36 4.89 16 26 H 0.34 8.06 7.14 -40.82 -0.29 7.76 16 27 H 0.38 7.33 8.42 -40.82 -0.34 6.99 16 28 H 0.02 0.52 7.97 -51.93 -0.41 0.11 16 29 H 0.02 0.52 7.97 -51.93 -0.41 0.11 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 261.41 15.07 3.94 3.94 Total: -1.00 -29.46 261.41 -9.01 -38.47 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -4.26 Total: 14.17 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -4.11 Total: -1.04 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: 0.45 Total: -71.40 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.46 -9.01 -38.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864465037.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.734 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds