Wall clock time and date at job start Mon Mar 30 2020 01:49:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09003 * 115.56186 * 2 1
4 4 C 1.53079 * 117.48997 * 214.29554 * 2 1 3
5 5 C 1.53000 * 117.49984 * 145.69208 * 2 1 3
6 6 H 1.08999 * 117.49550 * 359.97438 * 5 2 1
7 7 N 1.46499 * 117.49897 * 214.97738 * 5 2 1
8 8 C 1.37481 * 119.99674 * 155.36438 * 7 5 2
9 9 N 1.30344 * 120.00310 * 359.72079 * 8 7 5
10 10 N 1.37483 * 119.99878 * 179.72532 * 8 7 5
11 11 C 1.46493 * 120.00311 * 180.02562 * 10 8 7
12 12 C 1.50701 * 109.47646 * 180.02562 * 11 10 8
13 13 H 1.07999 * 119.99301 * 359.97438 * 12 11 10
14 14 C 1.37876 * 120.00193 * 179.97438 * 12 11 10
15 15 N 1.31514 * 119.99993 * 0.02562 * 14 12 11
16 16 Si 1.86802 * 119.99723 * 179.97438 * 14 12 11
17 17 H 1.48497 * 109.47273 * 0.02562 * 16 14 12
18 18 H 1.48502 * 109.47023 * 120.00204 * 16 14 12
19 19 H 1.48500 * 109.47272 * 239.99862 * 16 14 12
20 20 H 1.09003 * 109.47030 * 274.31033 * 1 2 3
21 21 H 1.08998 * 109.47038 * 34.30493 * 1 2 3
22 22 H 1.09005 * 109.47212 * 154.30880 * 1 2 3
23 23 H 1.09000 * 117.50899 * 145.04054 * 4 2 1
24 24 H 1.08993 * 117.49528 * 359.97438 * 4 2 1
25 25 H 0.97001 * 119.99790 * 335.08235 * 7 5 2
26 26 H 0.96995 * 120.00028 * 179.97438 * 9 8 7
27 27 H 0.97001 * 119.99646 * 359.97438 * 10 8 7
28 28 H 1.09004 * 109.46794 * 299.99905 * 11 10 8
29 29 H 1.09000 * 109.47559 * 59.99429 * 11 10 8
30 30 H 0.96996 * 119.99510 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 2.0003 0.9833 0.0000
4 6 2.2366 -1.1219 -0.7652
5 6 2.2365 -1.1210 0.7649
6 1 1.6112 -1.8583 1.2685
7 7 3.4933 -0.7907 1.4413
8 6 3.9106 -1.5360 2.5186
9 7 3.1855 -2.5331 2.9414
10 7 5.0929 -1.2295 3.1498
11 6 5.5380 -2.0240 4.2973
12 6 6.8519 -1.4854 4.8020
13 1 7.3097 -0.6365 4.3162
14 6 7.4693 -2.0765 5.8839
15 7 6.9119 -3.1106 6.4751
16 14 9.0983 -1.4093 6.5089
17 1 9.5106 -0.2504 5.6769
18 1 8.9464 -0.9752 7.9209
19 1 10.1328 -2.4715 6.4263
20 1 -0.3633 0.0772 1.0248
21 1 -0.3633 0.8489 -0.5792
22 1 -0.3634 -0.9261 -0.4455
23 1 3.1719 -0.8766 -1.2684
24 1 1.6112 -1.8596 -1.2678
25 1 4.0329 -0.0486 1.1266
26 1 3.4802 -3.0592 3.7012
27 1 5.6327 -0.4876 2.8349
28 1 4.7929 -1.9653 5.0908
29 1 5.6636 -3.0631 3.9931
30 1 7.3462 -3.5261 7.2364
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000864465037.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:49:15
Heat of formation + Delta-G solvation = 25.902064 kcal
Electronic energy + Delta-G solvation = -11961.394591 eV
Core-core repulsion = 9791.628049 eV
Total energy + Delta-G solvation = -2169.766541 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 197.122 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-39.81659 -38.13361 -35.35805 -33.57202 -31.76277 -29.29376 -28.53776 -24.88709
-22.74742 -21.56025 -21.08897 -19.46044 -17.82624 -17.46208 -16.64964 -15.88854
-15.37871 -15.16058 -14.53750 -14.19275 -13.98596 -13.83587 -13.44729 -12.83681
-12.81131 -12.71439 -12.25643 -12.22147 -11.48144 -11.47020 -10.88546 -10.72962
-10.27917 -9.26235 -8.79031 -8.31662 -6.46384 1.41945 1.42382 1.55654
1.94913 2.19884 2.37218 3.03665 3.07818 3.33883 3.87953 4.06061
4.19409 4.49735 4.68735 4.88757 4.96732 4.99593 5.01740 5.22572
5.23622 5.30699 5.47217 5.48672 5.81195 5.85078 6.38719 6.51301
6.63756 7.22046 7.38733 7.92972 8.80537
Molecular weight = 197.12amu
Principal moments of inertia in cm(-1)
A = 0.089497 B = 0.005887 C = 0.005708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 312.784947 B = 4754.721572 C = 4904.211819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.156 4.156
3 H 0.112 0.888
4 C -0.186 4.186
5 C 0.095 3.905
6 H 0.117 0.883
7 N -0.691 5.691
8 C 0.627 3.373
9 N -0.866 5.866
10 N -0.757 5.757
11 C 0.281 3.719
12 C -0.554 4.554
13 H 0.076 0.924
14 C 0.008 3.992
15 N -0.927 5.927
16 Si 0.982 3.018
17 H -0.258 1.258
18 H -0.278 1.278
19 H -0.278 1.278
20 H 0.054 0.946
21 H 0.075 0.925
22 H 0.061 0.939
23 H 0.099 0.901
24 H 0.107 0.893
25 H 0.410 0.590
26 H 0.328 0.672
27 H 0.392 0.608
28 H -0.012 1.012
29 H -0.012 1.012
30 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.610 7.770 -12.263 15.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.175 4.175
3 H 0.130 0.870
4 C -0.225 4.225
5 C -0.012 4.012
6 H 0.135 0.865
7 N -0.333 5.333
8 C 0.260 3.740
9 N -0.517 5.517
10 N -0.400 5.400
11 C 0.157 3.843
12 C -0.592 4.592
13 H 0.094 0.906
14 C -0.192 4.192
15 N -0.566 5.566
16 Si 0.806 3.194
17 H -0.182 1.182
18 H -0.203 1.203
19 H -0.203 1.203
20 H 0.073 0.927
21 H 0.094 0.906
22 H 0.080 0.920
23 H 0.118 0.882
24 H 0.126 0.874
25 H 0.247 0.753
26 H 0.143 0.857
27 H 0.226 0.774
28 H 0.006 0.994
29 H 0.006 0.994
30 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -7.591 7.070 -12.330 16.113
hybrid contribution 2.001 0.426 1.062 2.305
sum -5.591 7.496 -11.267 14.642
Atomic orbital electron populations
1.21357 0.91508 1.02855 1.01981 1.22934 0.96452 0.94861 1.03302
0.86999 1.23715 1.02890 1.01610 0.94315 1.21521 0.86994 1.01664
0.90986 0.86524 1.43061 1.24595 1.34731 1.30876 1.19026 0.81898
0.87937 0.85128 1.69476 1.37881 1.15991 1.28384 1.45651 1.22294
1.37240 1.34862 1.18423 0.93922 0.89733 0.82216 1.21553 1.05831
1.16454 1.15370 0.90642 1.25971 1.02180 0.94852 0.96237 1.70100
1.41025 1.22865 1.22572 0.85149 0.77691 0.78495 0.78112 1.18184
1.20341 1.20337 0.92741 0.90570 0.91961 0.88242 0.87443 0.75287
0.85666 0.77379 0.99386 0.99383 0.92186
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.00 10.19 71.98 0.73 -1.26 16
2 C -0.16 -3.04 6.33 -10.77 -0.07 -3.10 16
3 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16
4 C -0.19 -3.78 10.11 30.62 0.31 -3.47 16
5 C 0.10 2.58 6.17 44.99 0.28 2.86 16
6 H 0.12 3.78 7.32 -2.39 -0.02 3.76 16
7 N -0.69 -21.09 5.68 -328.81 -1.87 -22.96 16
8 C 0.63 25.54 8.71 260.54 2.27 27.81 16
9 N -0.87 -39.35 12.74 -58.53 -0.75 -40.09 16
10 N -0.76 -32.60 5.66 -353.16 -2.00 -34.60 16
11 C 0.28 14.99 4.77 85.63 0.41 15.40 16
12 C -0.55 -30.19 9.28 25.60 0.24 -29.96 16
13 H 0.08 3.83 7.60 -2.91 -0.02 3.81 16
14 C 0.01 0.41 5.46 84.65 0.46 0.88 16
15 N -0.93 -54.76 13.29 21.45 0.28 -54.47 16
16 Si 0.98 42.36 29.54 68.60 2.03 44.39 16
17 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16
18 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16
19 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16
20 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
21 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16
22 H 0.06 0.98 7.90 -2.38 -0.02 0.96 16
23 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16
24 H 0.11 1.96 8.05 -2.39 -0.02 1.95 16
25 H 0.41 10.07 8.92 -92.71 -0.83 9.24 16
26 H 0.33 16.26 7.14 -92.71 -0.66 15.60 16
27 H 0.39 14.81 8.42 -92.71 -0.78 14.03 16
28 H -0.01 -0.69 7.97 -2.38 -0.02 -0.71 16
29 H -0.01 -0.69 7.97 -2.39 -0.02 -0.70 16
30 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16
Total: -1.00 -63.88 261.41 1.22 -62.66
By element:
Atomic # 1 Polarization: 37.03 SS G_CDS: -1.11 Total: 35.92 kcal
Atomic # 6 Polarization: 4.52 SS G_CDS: 4.63 Total: 9.15 kcal
Atomic # 7 Polarization: -147.80 SS G_CDS: -4.33 Total: -152.12 kcal
Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal
Total: -63.88 1.22 -62.66 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000864465037.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.567 kcal
(2) G-P(sol) polarization free energy of solvation -63.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.902 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds