Wall clock time and date at job start Mon Mar 30 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 115.55031 * 2 1 4 4 C 1.53001 * 117.49866 * 214.28514 * 2 1 3 5 5 C 1.53000 * 117.49497 * 145.66106 * 2 1 3 6 6 H 1.08998 * 117.50177 * 215.00163 * 5 2 1 7 7 N 1.46503 * 117.50222 * 0.02562 * 5 2 1 8 8 C 1.37475 * 120.00183 * 204.99640 * 7 5 2 9 9 N 1.30347 * 119.99911 * 359.97438 * 8 7 5 10 10 N 1.37483 * 120.00080 * 179.97438 * 8 7 5 11 11 C 1.46504 * 120.00165 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47227 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99958 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99829 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00205 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99900 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47144 * 90.00271 * 16 14 12 18 18 H 1.48502 * 109.47127 * 210.00195 * 16 14 12 19 19 H 1.48500 * 109.46946 * 330.00053 * 16 14 12 20 20 H 1.09001 * 109.46801 * 274.33634 * 1 2 3 21 21 H 1.09001 * 109.46998 * 34.33231 * 1 2 3 22 22 H 1.09000 * 109.47050 * 154.33522 * 1 2 3 23 23 H 1.08996 * 117.49555 * 359.97438 * 4 2 1 24 24 H 1.08995 * 117.49577 * 145.02406 * 4 2 1 25 25 H 0.97003 * 119.99821 * 24.99633 * 7 5 2 26 26 H 0.97000 * 119.99711 * 179.97438 * 9 8 7 27 27 H 0.96994 * 120.00432 * 0.02562 * 10 8 7 28 28 H 1.09007 * 109.47049 * 300.00024 * 11 10 8 29 29 H 1.08997 * 109.47074 * 59.99874 * 11 10 8 30 30 H 0.96996 * 120.00062 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7656 6 1 3.1713 -0.8746 1.2691 7 7 1.3961 -2.1119 1.4420 8 6 1.8854 -2.8042 2.5242 9 7 3.0973 -2.5791 2.9481 10 7 1.0966 -3.7340 3.1593 11 6 1.6179 -4.4715 4.3129 12 6 0.5632 -5.4205 4.8208 13 1 -0.3991 -5.4698 4.3328 14 6 0.8270 -6.2266 5.9078 15 7 1.9989 -6.1670 6.5017 16 14 -0.4801 -7.4036 6.5369 17 1 -0.3417 -8.7115 5.8474 18 1 -0.3111 -7.5949 7.9998 19 1 -1.8265 -6.8399 6.2638 20 1 -0.3633 0.0777 1.0248 21 1 -0.3633 0.8486 -0.5796 22 1 -0.3633 -0.9263 -0.4451 23 1 1.6112 -1.8592 -1.2671 24 1 3.1716 -0.8757 -1.2678 25 1 0.4943 -2.2796 1.1263 26 1 3.4424 -3.0674 3.7119 27 1 0.1949 -3.9018 2.8437 28 1 2.5015 -5.0356 4.0144 29 1 1.8848 -3.7692 5.1026 30 1 2.1843 -6.7338 7.2666 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864465038.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:16 Heat of formation + Delta-G solvation = 44.877827 kcal Electronic energy + Delta-G solvation = -12068.449538 eV Core-core repulsion = 9899.505847 eV Total energy + Delta-G solvation = -2168.943690 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.61200 -36.67594 -33.40642 -31.73952 -29.99893 -28.43848 -26.83670 -22.99772 -21.64383 -20.31104 -19.47096 -17.68680 -16.00809 -15.85957 -14.92895 -14.51604 -14.18612 -13.61898 -13.18544 -12.88246 -12.47765 -12.16806 -11.97238 -11.75226 -11.42120 -10.98258 -10.93766 -10.28999 -10.16249 -9.84893 -9.43618 -8.67350 -8.55204 -7.79507 -7.08239 -6.21014 -4.26769 3.22466 3.28181 3.30509 3.41131 3.71934 4.17444 4.29358 4.81592 4.98142 5.05975 5.10388 5.15968 5.30454 5.75277 5.78089 5.86297 5.98717 6.07915 6.26636 6.62385 7.06054 7.41334 7.45757 7.55078 7.76943 7.93340 8.29359 8.69451 9.02559 9.39222 9.63786 10.89589 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071568 B = 0.006386 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.142087 B = 4383.764374 C = 4648.419390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.180 4.180 3 H 0.106 0.894 4 C -0.204 4.204 5 C 0.134 3.866 6 H 0.142 0.858 7 N -0.705 5.705 8 C 0.629 3.371 9 N -0.848 5.848 10 N -0.761 5.761 11 C 0.262 3.738 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.905 3.095 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.396 0.604 26 H 0.343 0.657 27 H 0.379 0.621 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 8.396 -10.927 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.200 4.200 3 H 0.124 0.876 4 C -0.243 4.243 5 C 0.026 3.974 6 H 0.159 0.841 7 N -0.346 5.346 8 C 0.261 3.739 9 N -0.499 5.499 10 N -0.404 5.404 11 C 0.140 3.860 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.732 3.268 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.109 0.891 24 H 0.114 0.886 25 H 0.231 0.769 26 H 0.160 0.840 27 H 0.211 0.789 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.230 8.931 -10.921 14.283 hybrid contribution -1.776 -1.562 0.694 2.465 sum -4.006 7.369 -10.228 13.227 Atomic orbital electron populations 1.21266 0.93198 1.01534 1.01912 1.22843 0.95593 0.95204 1.06331 0.87622 1.23607 1.02607 1.01297 0.96824 1.21390 0.96304 0.90341 0.89381 0.84077 1.43047 1.16293 1.43224 1.31988 1.18771 0.87252 0.83456 0.84392 1.69423 1.10910 1.41346 1.28268 1.45987 1.16703 1.42503 1.35162 1.18941 0.95233 0.90235 0.81590 1.21147 0.99912 1.21942 1.14612 0.91971 1.24945 0.95851 0.97091 0.96139 1.69951 1.21509 1.39291 1.21762 0.86389 0.81426 0.80903 0.78054 1.20450 1.20964 1.19780 0.92023 0.92400 0.92817 0.89076 0.88621 0.76912 0.84012 0.78884 0.96354 0.96342 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.19 37.16 0.34 -0.85 16 2 C -0.18 -1.97 6.41 -90.62 -0.58 -2.55 16 3 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.20 -2.32 10.10 -26.73 -0.27 -2.59 16 5 C 0.13 1.88 6.42 -67.92 -0.44 1.45 16 6 H 0.14 2.24 7.32 -51.93 -0.38 1.86 16 7 N -0.71 -11.07 5.45 -55.28 -0.30 -11.37 16 8 C 0.63 12.67 8.71 -320.10 -2.79 9.88 16 9 N -0.85 -18.60 12.73 30.15 0.38 -18.22 16 10 N -0.76 -16.27 5.66 -62.97 -0.36 -16.62 16 11 C 0.26 6.77 4.77 -5.19 -0.02 6.75 16 12 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 13 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 16 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.50 7.61 -51.93 -0.40 0.10 16 23 H 0.09 1.01 8.05 -51.93 -0.42 0.60 16 24 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.40 5.32 7.79 -40.82 -0.32 5.00 16 26 H 0.34 8.04 7.15 -40.82 -0.29 7.75 16 27 H 0.38 7.32 8.42 -40.82 -0.34 6.98 16 28 H 0.02 0.52 7.97 -51.93 -0.41 0.11 16 29 H 0.02 0.52 7.97 -51.93 -0.41 0.11 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 259.09 15.07 3.90 3.90 Total: -1.00 -29.33 259.09 -9.03 -38.36 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -4.20 Total: 14.33 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -4.18 Total: -1.20 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: 0.46 Total: -71.24 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.33 -9.03 -38.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864465038.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.239 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds