Wall clock time and date at job start Mon Mar 30 2020 01:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 115.55031 * 2 1 4 4 C 1.53001 * 117.49866 * 214.28514 * 2 1 3 5 5 C 1.53000 * 117.49497 * 145.66106 * 2 1 3 6 6 H 1.08998 * 117.50177 * 215.00163 * 5 2 1 7 7 N 1.46503 * 117.50222 * 0.02562 * 5 2 1 8 8 C 1.37475 * 120.00183 * 204.99640 * 7 5 2 9 9 N 1.30347 * 119.99911 * 359.97438 * 8 7 5 10 10 N 1.37483 * 120.00080 * 179.97438 * 8 7 5 11 11 C 1.46504 * 120.00165 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47227 * 179.97438 * 11 10 8 13 13 H 1.08002 * 119.99958 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99829 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00205 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99900 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47144 * 90.00271 * 16 14 12 18 18 H 1.48502 * 109.47127 * 210.00195 * 16 14 12 19 19 H 1.48500 * 109.46946 * 330.00053 * 16 14 12 20 20 H 1.09001 * 109.46801 * 274.33634 * 1 2 3 21 21 H 1.09001 * 109.46998 * 34.33231 * 1 2 3 22 22 H 1.09000 * 109.47050 * 154.33522 * 1 2 3 23 23 H 1.08996 * 117.49555 * 359.97438 * 4 2 1 24 24 H 1.08995 * 117.49577 * 145.02406 * 4 2 1 25 25 H 0.97003 * 119.99821 * 24.99633 * 7 5 2 26 26 H 0.97000 * 119.99711 * 179.97438 * 9 8 7 27 27 H 0.96994 * 120.00432 * 0.02562 * 10 8 7 28 28 H 1.09007 * 109.47049 * 300.00024 * 11 10 8 29 29 H 1.08997 * 109.47074 * 59.99874 * 11 10 8 30 30 H 0.96996 * 120.00062 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7656 6 1 3.1713 -0.8746 1.2691 7 7 1.3961 -2.1119 1.4420 8 6 1.8854 -2.8042 2.5242 9 7 3.0973 -2.5791 2.9481 10 7 1.0966 -3.7340 3.1593 11 6 1.6179 -4.4715 4.3129 12 6 0.5632 -5.4205 4.8208 13 1 -0.3991 -5.4698 4.3328 14 6 0.8270 -6.2266 5.9078 15 7 1.9989 -6.1670 6.5017 16 14 -0.4801 -7.4036 6.5369 17 1 -0.3417 -8.7115 5.8474 18 1 -0.3111 -7.5949 7.9998 19 1 -1.8265 -6.8399 6.2638 20 1 -0.3633 0.0777 1.0248 21 1 -0.3633 0.8486 -0.5796 22 1 -0.3633 -0.9263 -0.4451 23 1 1.6112 -1.8592 -1.2671 24 1 3.1716 -0.8757 -1.2678 25 1 0.4943 -2.2796 1.1263 26 1 3.4424 -3.0674 3.7119 27 1 0.1949 -3.9018 2.8437 28 1 2.5015 -5.0356 4.0144 29 1 1.8848 -3.7692 5.1026 30 1 2.1843 -6.7338 7.2666 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864465038.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:16 Heat of formation + Delta-G solvation = 26.777731 kcal Electronic energy + Delta-G solvation = -12069.234417 eV Core-core repulsion = 9899.505847 eV Total energy + Delta-G solvation = -2169.728570 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.89132 -38.14064 -35.31896 -33.43601 -31.64537 -29.38647 -28.74659 -24.91204 -22.79251 -21.58052 -20.78833 -19.53127 -17.81135 -17.26972 -16.64369 -15.81405 -15.69595 -15.35595 -14.67765 -14.07074 -13.96781 -13.65854 -13.28341 -13.02006 -12.84464 -12.69679 -12.25472 -12.21729 -11.49763 -11.47017 -10.83336 -10.71881 -10.26893 -9.26127 -8.78500 -8.31305 -6.46182 1.41992 1.43745 1.54822 1.96166 2.20395 2.37557 3.03937 3.08724 3.34470 3.85235 4.07959 4.18164 4.49093 4.69657 4.90343 4.95702 4.97351 5.01714 5.22240 5.22953 5.31121 5.45217 5.48006 5.81295 5.85308 6.38612 6.51572 6.63700 7.22193 7.38974 7.93293 8.80655 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071568 B = 0.006386 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.142087 B = 4383.764374 C = 4648.419390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.157 4.157 3 H 0.119 0.881 4 C -0.187 4.187 5 C 0.094 3.906 6 H 0.118 0.882 7 N -0.688 5.688 8 C 0.627 3.373 9 N -0.866 5.866 10 N -0.757 5.757 11 C 0.281 3.719 12 C -0.555 4.555 13 H 0.076 0.924 14 C 0.008 3.992 15 N -0.927 5.927 16 Si 0.982 3.018 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.260 1.260 20 H 0.053 0.947 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.098 0.902 24 H 0.108 0.892 25 H 0.409 0.591 26 H 0.328 0.672 27 H 0.392 0.608 28 H -0.012 1.012 29 H -0.012 1.012 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 8.606 -12.282 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.177 4.177 3 H 0.137 0.863 4 C -0.226 4.226 5 C -0.013 4.013 6 H 0.136 0.864 7 N -0.330 5.330 8 C 0.260 3.740 9 N -0.517 5.517 10 N -0.401 5.401 11 C 0.158 3.842 12 C -0.593 4.593 13 H 0.094 0.906 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.806 3.194 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.184 1.184 20 H 0.072 0.928 21 H 0.095 0.905 22 H 0.078 0.922 23 H 0.116 0.884 24 H 0.126 0.874 25 H 0.246 0.754 26 H 0.143 0.857 27 H 0.226 0.774 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.142 9.185 -12.347 15.936 hybrid contribution -1.152 -1.548 1.048 2.196 sum -5.293 7.636 -11.299 14.629 Atomic orbital electron populations 1.21314 0.92064 1.02801 1.01866 1.22944 0.96420 0.95017 1.03291 0.86260 1.23659 1.03365 1.01281 0.94301 1.21473 0.96404 0.92401 0.91012 0.86438 1.43001 1.16967 1.42599 1.30435 1.19027 0.86679 0.83188 0.85102 1.69481 1.12090 1.41909 1.28232 1.45650 1.17375 1.42651 1.34384 1.18415 0.94291 0.89438 0.82079 1.21527 1.00537 1.22208 1.15049 0.90638 1.25972 0.98138 0.98872 0.96244 1.70092 1.23762 1.40370 1.22338 0.85195 0.78669 0.78349 0.77236 1.19672 1.20744 1.18388 0.92812 0.90504 0.92161 0.88352 0.87382 0.75397 0.85685 0.77426 0.99410 0.99384 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 9.19 71.98 0.66 -1.38 16 2 C -0.16 -3.03 6.41 -10.79 -0.07 -3.10 16 3 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.19 -3.78 10.10 30.60 0.31 -3.47 16 5 C 0.09 2.54 6.42 44.99 0.29 2.83 16 6 H 0.12 3.76 7.32 -2.39 -0.02 3.74 16 7 N -0.69 -20.99 5.45 -328.81 -1.79 -22.78 16 8 C 0.63 25.50 8.71 260.54 2.27 27.77 16 9 N -0.87 -39.25 12.73 -58.53 -0.75 -40.00 16 10 N -0.76 -32.60 5.66 -353.14 -2.00 -34.59 16 11 C 0.28 15.02 4.77 85.63 0.41 15.43 16 12 C -0.56 -30.25 9.28 25.60 0.24 -30.01 16 13 H 0.08 3.82 7.60 -2.91 -0.02 3.80 16 14 C 0.01 0.42 5.46 84.66 0.46 0.89 16 15 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 16 Si 0.98 42.32 29.54 68.60 2.03 44.35 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 20 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.06 0.93 7.61 -2.39 -0.02 0.91 16 23 H 0.10 1.88 8.05 -2.39 -0.02 1.86 16 24 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.41 10.25 7.79 -92.71 -0.72 9.53 16 26 H 0.33 16.23 7.15 -92.71 -0.66 15.57 16 27 H 0.39 14.82 8.42 -92.71 -0.78 14.04 16 28 H -0.01 -0.70 7.97 -2.38 -0.02 -0.72 16 29 H -0.01 -0.69 7.97 -2.39 -0.02 -0.70 16 30 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -63.62 259.09 1.34 -62.29 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -1.01 Total: 36.28 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 4.57 Total: 8.96 kcal Atomic # 7 Polarization: -147.61 SS G_CDS: -4.25 Total: -151.87 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -63.62 1.34 -62.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864465038.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.067 kcal (2) G-P(sol) polarization free energy of solvation -63.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds