Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.56589 * 2 1 4 4 C 1.53077 * 117.51007 * 214.29648 * 2 1 3 5 5 C 1.52995 * 117.49416 * 145.03626 * 4 2 1 6 6 C 1.53001 * 117.53014 * 359.97438 * 4 2 1 7 7 C 1.53002 * 59.98583 * 252.52168 * 4 2 1 8 8 C 1.52997 * 117.49906 * 252.49771 * 7 4 2 9 9 N 1.46504 * 117.49541 * 107.49908 * 7 4 2 10 10 C 1.36935 * 119.99794 * 74.48903 * 9 7 4 11 11 H 1.07999 * 120.00309 * 359.97438 * 10 9 7 12 12 C 1.38812 * 119.99972 * 179.97438 * 10 9 7 13 13 N 1.31624 * 119.99832 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00299 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47299 * 89.99468 * 14 12 10 16 16 H 1.48499 * 109.47395 * 209.99836 * 14 12 10 17 17 H 1.48500 * 109.46867 * 329.99695 * 14 12 10 18 18 H 1.09006 * 109.46951 * 325.69914 * 1 2 3 19 19 H 1.08998 * 109.47362 * 85.69820 * 1 2 3 20 20 H 1.09004 * 109.47324 * 205.70438 * 1 2 3 21 21 H 1.08998 * 109.47467 * 159.37124 * 3 2 1 22 22 H 1.08999 * 109.46582 * 279.37237 * 3 2 1 23 23 H 1.08998 * 109.47067 * 39.37104 * 3 2 1 24 24 H 1.09001 * 109.47663 * 179.97438 * 5 4 2 25 25 H 1.09009 * 109.47223 * 299.99587 * 5 4 2 26 26 H 1.08996 * 109.47300 * 59.99424 * 5 4 2 27 27 H 1.08991 * 109.47599 * 345.56966 * 6 4 2 28 28 H 1.09003 * 109.46957 * 105.57052 * 6 4 2 29 29 H 1.09006 * 109.47134 * 225.56399 * 6 4 2 30 30 H 1.09005 * 109.47135 * 293.77056 * 8 7 4 31 31 H 1.08993 * 109.47098 * 53.77152 * 8 7 4 32 32 H 1.09004 * 109.47091 * 173.77163 * 8 7 4 33 33 H 0.96996 * 120.00104 * 254.48429 * 9 7 4 34 34 H 0.97001 * 119.99990 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2370 -1.1216 -0.7650 5 6 3.5497 -0.7765 -1.4710 6 6 1.3603 -2.1579 -1.4711 7 6 2.2364 -1.1211 0.7650 8 6 3.5487 -0.7760 1.4718 9 7 1.3960 -2.1123 1.4414 10 6 1.7805 -3.4260 1.4768 11 1 2.7031 -3.7316 1.0058 12 6 0.9845 -4.3652 2.1182 13 7 -0.1396 -3.9927 2.6927 14 14 1.5093 -6.1572 2.1671 15 1 2.3364 -6.3980 3.3767 16 1 0.3049 -7.0248 2.2103 17 1 2.3039 -6.4736 0.9531 18 1 -0.3633 0.8490 0.5792 19 1 -0.3634 0.0771 -1.0247 20 1 -0.3634 -0.9260 0.4457 21 1 3.2146 1.2930 0.3620 22 1 2.1960 1.7801 -1.0140 23 1 1.6304 2.0508 0.6519 24 1 3.9380 -1.6641 -1.9705 25 1 3.3710 0.0066 -2.2080 26 1 4.2757 -0.4261 -0.7374 27 1 0.3367 -2.0773 -1.1057 28 1 1.3779 -1.9768 -2.5458 29 1 1.7421 -3.1579 -1.2649 30 1 4.2845 -1.5552 1.2727 31 1 3.9211 0.1788 1.1007 32 1 3.3755 -0.7057 2.5457 33 1 0.5673 -1.8379 1.8642 34 1 -0.6957 -4.6488 3.1412 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885288177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = 26.461862 kcal Electronic energy + Delta-G solvation = -13482.049318 eV Core-core repulsion = 11415.847395 eV Total energy + Delta-G solvation = -2066.201923 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.21944 -33.43150 -30.54279 -30.44111 -29.39559 -26.95766 -25.65408 -24.88495 -23.25721 -17.62941 -17.48171 -16.67967 -15.10752 -14.36072 -13.93453 -13.75477 -13.48459 -12.74821 -12.34390 -12.08246 -11.94081 -11.65042 -11.42338 -11.35986 -11.16689 -11.08251 -10.96029 -10.82434 -10.50597 -10.12990 -10.04684 -9.67999 -9.11089 -8.50397 -8.36627 -6.88837 -5.72196 -2.99698 3.45531 3.51096 3.52362 4.38456 4.63524 5.25713 5.36376 5.39747 5.62829 5.66220 5.82230 5.90570 6.02919 6.05669 6.17337 6.27776 6.31265 6.42233 6.44073 6.51125 6.52803 6.60999 6.68909 6.74361 6.82138 6.98177 7.06221 7.18274 7.31560 7.79483 8.47359 9.57436 10.16756 10.51434 11.50545 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042806 B = 0.011657 C = 0.011176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.954446 B = 2401.375513 C = 2504.657108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.135 4.135 3 C -0.116 4.116 4 C -0.138 4.138 5 C -0.110 4.110 6 C -0.096 4.096 7 C 0.159 3.841 8 C -0.128 4.128 9 N -0.691 5.691 10 C -0.221 4.221 11 H 0.069 0.931 12 C -0.016 4.016 13 N -0.935 5.935 14 Si 0.904 3.096 15 H -0.291 1.291 16 H -0.293 1.293 17 H -0.283 1.283 18 H 0.046 0.954 19 H 0.046 0.954 20 H 0.075 0.925 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.387 0.613 34 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 8.026 -6.234 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 C -0.173 4.173 4 C -0.141 4.141 5 C -0.168 4.168 6 C -0.153 4.153 7 C 0.065 3.935 8 C -0.187 4.187 9 N -0.331 5.331 10 C -0.352 4.352 11 H 0.087 0.913 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.735 3.265 15 H -0.219 1.219 16 H -0.219 1.219 17 H -0.208 1.208 18 H 0.065 0.935 19 H 0.065 0.935 20 H 0.094 0.906 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.223 0.777 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.542 7.826 -6.221 10.981 hybrid contribution -0.075 -1.000 0.191 1.021 sum 4.467 6.826 -6.030 10.145 Atomic orbital electron populations 1.21277 0.92858 1.02450 1.00521 1.21896 0.94594 0.90602 1.06474 1.21423 1.00489 0.94744 1.00641 1.22085 0.96746 0.98757 0.96498 1.21286 0.95834 1.00254 0.99397 1.21065 0.99671 0.98118 0.96420 1.20320 0.92399 0.92093 0.88663 1.21734 0.96959 0.99552 1.00430 1.41784 1.24112 1.03265 1.63911 1.19140 1.04051 0.83832 1.28186 0.91282 1.24700 0.97275 0.97863 1.01320 1.69654 1.13939 1.33198 1.41656 0.86230 0.77176 0.85453 0.77626 1.21885 1.21920 1.20835 0.93470 0.93458 0.90580 0.91857 0.93179 0.93018 0.93051 0.93538 0.92578 0.92077 0.94950 0.92018 0.92970 0.92813 0.92532 0.77741 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 8.26 37.16 0.31 -1.71 16 2 C -0.13 -2.38 2.70 -154.47 -0.42 -2.80 16 3 C -0.12 -1.68 8.70 37.16 0.32 -1.36 16 4 C -0.14 -2.55 2.70 -154.47 -0.42 -2.97 16 5 C -0.11 -1.71 8.70 37.16 0.32 -1.39 16 6 C -0.10 -1.86 8.67 37.16 0.32 -1.54 16 7 C 0.16 3.24 2.64 -131.81 -0.35 2.89 16 8 C -0.13 -2.36 8.36 37.16 0.31 -2.05 16 9 N -0.69 -17.21 4.30 -47.23 -0.20 -17.42 16 10 C -0.22 -6.05 8.95 -15.06 -0.13 -6.18 16 11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 12 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 13 N -0.94 -28.11 13.06 55.49 0.72 -27.39 16 14 Si 0.90 22.56 29.55 -169.99 -5.02 17.53 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 19 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 20 H 0.08 1.57 5.59 -51.93 -0.29 1.28 16 21 H 0.06 0.88 4.88 -51.93 -0.25 0.63 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.71 8.01 -51.93 -0.42 0.29 16 24 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 25 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.06 0.82 5.66 -51.93 -0.29 0.53 16 27 H 0.06 1.27 6.09 -51.93 -0.32 0.95 16 28 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.06 1.32 7.63 -51.93 -0.40 0.93 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.83 4.40 -51.93 -0.23 0.60 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.39 10.33 6.70 -40.82 -0.27 10.05 16 34 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 263.37 15.07 3.97 3.97 Total: -1.00 -28.89 263.37 -5.74 -34.64 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.38 Total: 6.33 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 0.17 Total: -17.67 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.52 Total: -44.80 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.89 -5.74 -34.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885288177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.099 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds