Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 115.56589 * 2 1 4 4 C 1.53077 * 117.51007 * 214.29648 * 2 1 3 5 5 C 1.52995 * 117.49416 * 145.03626 * 4 2 1 6 6 C 1.53001 * 117.53014 * 359.97438 * 4 2 1 7 7 C 1.53002 * 59.98583 * 252.52168 * 4 2 1 8 8 C 1.52997 * 117.49906 * 252.49771 * 7 4 2 9 9 N 1.46504 * 117.49541 * 107.49908 * 7 4 2 10 10 C 1.36935 * 119.99794 * 74.48903 * 9 7 4 11 11 H 1.07999 * 120.00309 * 359.97438 * 10 9 7 12 12 C 1.38812 * 119.99972 * 179.97438 * 10 9 7 13 13 N 1.31624 * 119.99832 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00299 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47299 * 89.99468 * 14 12 10 16 16 H 1.48499 * 109.47395 * 209.99836 * 14 12 10 17 17 H 1.48500 * 109.46867 * 329.99695 * 14 12 10 18 18 H 1.09006 * 109.46951 * 325.69914 * 1 2 3 19 19 H 1.08998 * 109.47362 * 85.69820 * 1 2 3 20 20 H 1.09004 * 109.47324 * 205.70438 * 1 2 3 21 21 H 1.08998 * 109.47467 * 159.37124 * 3 2 1 22 22 H 1.08999 * 109.46582 * 279.37237 * 3 2 1 23 23 H 1.08998 * 109.47067 * 39.37104 * 3 2 1 24 24 H 1.09001 * 109.47663 * 179.97438 * 5 4 2 25 25 H 1.09009 * 109.47223 * 299.99587 * 5 4 2 26 26 H 1.08996 * 109.47300 * 59.99424 * 5 4 2 27 27 H 1.08991 * 109.47599 * 345.56966 * 6 4 2 28 28 H 1.09003 * 109.46957 * 105.57052 * 6 4 2 29 29 H 1.09006 * 109.47134 * 225.56399 * 6 4 2 30 30 H 1.09005 * 109.47135 * 293.77056 * 8 7 4 31 31 H 1.08993 * 109.47098 * 53.77152 * 8 7 4 32 32 H 1.09004 * 109.47091 * 173.77163 * 8 7 4 33 33 H 0.96996 * 120.00104 * 254.48429 * 9 7 4 34 34 H 0.97001 * 119.99990 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2370 -1.1216 -0.7650 5 6 3.5497 -0.7765 -1.4710 6 6 1.3603 -2.1579 -1.4711 7 6 2.2364 -1.1211 0.7650 8 6 3.5487 -0.7760 1.4718 9 7 1.3960 -2.1123 1.4414 10 6 1.7805 -3.4260 1.4768 11 1 2.7031 -3.7316 1.0058 12 6 0.9845 -4.3652 2.1182 13 7 -0.1396 -3.9927 2.6927 14 14 1.5093 -6.1572 2.1671 15 1 2.3364 -6.3980 3.3767 16 1 0.3049 -7.0248 2.2103 17 1 2.3039 -6.4736 0.9531 18 1 -0.3633 0.8490 0.5792 19 1 -0.3634 0.0771 -1.0247 20 1 -0.3634 -0.9260 0.4457 21 1 3.2146 1.2930 0.3620 22 1 2.1960 1.7801 -1.0140 23 1 1.6304 2.0508 0.6519 24 1 3.9380 -1.6641 -1.9705 25 1 3.3710 0.0066 -2.2080 26 1 4.2757 -0.4261 -0.7374 27 1 0.3367 -2.0773 -1.1057 28 1 1.3779 -1.9768 -2.5458 29 1 1.7421 -3.1579 -1.2649 30 1 4.2845 -1.5552 1.2727 31 1 3.9211 0.1788 1.1007 32 1 3.3755 -0.7057 2.5457 33 1 0.5673 -1.8379 1.8642 34 1 -0.6957 -4.6488 3.1412 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885288177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = 9.565695 kcal Electronic energy + Delta-G solvation = -13482.781991 eV Core-core repulsion = 11415.847395 eV Total energy + Delta-G solvation = -2066.934596 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.70889 -35.42288 -32.33146 -31.90325 -30.93617 -28.45181 -27.01031 -26.45635 -25.20525 -19.37844 -19.22768 -18.30184 -16.72866 -16.09790 -15.55924 -15.36906 -15.05046 -14.34502 -13.93985 -13.45056 -13.35007 -13.05412 -12.94334 -12.87876 -12.79903 -12.64992 -12.57561 -12.53115 -12.14272 -12.02767 -11.64669 -11.44951 -11.06362 -10.09767 -9.89571 -8.86885 -7.89267 -5.15182 1.45488 1.46268 1.54372 2.56252 2.95036 3.43741 3.73415 3.93240 4.00671 4.32756 4.36080 4.46284 4.68472 4.84452 4.87866 4.91387 4.95762 5.00944 5.08876 5.11072 5.16316 5.23426 5.27921 5.29687 5.36748 5.46146 5.56579 5.61196 5.76295 5.83201 6.34324 7.38538 8.18669 8.40535 9.34381 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.042806 B = 0.011657 C = 0.011176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.954446 B = 2401.375513 C = 2504.657108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C -0.112 4.112 4 C -0.138 4.138 5 C -0.106 4.106 6 C -0.092 4.092 7 C 0.118 3.882 8 C -0.120 4.120 9 N -0.701 5.701 10 C -0.207 4.207 11 H 0.067 0.933 12 C -0.079 4.079 13 N -0.972 5.972 14 Si 0.963 3.037 15 H -0.290 1.290 16 H -0.298 1.298 17 H -0.272 1.272 18 H 0.062 0.938 19 H 0.060 0.940 20 H 0.038 0.962 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.373 0.627 34 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 9.564 -7.663 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.120 4.120 3 C -0.169 4.169 4 C -0.140 4.140 5 C -0.163 4.163 6 C -0.150 4.150 7 C 0.026 3.974 8 C -0.178 4.178 9 N -0.340 5.340 10 C -0.339 4.339 11 H 0.085 0.915 12 C -0.271 4.271 13 N -0.624 5.624 14 Si 0.793 3.207 15 H -0.218 1.218 16 H -0.225 1.225 17 H -0.198 1.198 18 H 0.081 0.919 19 H 0.079 0.921 20 H 0.057 0.943 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.206 0.794 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.063 9.390 -7.682 13.563 hybrid contribution -0.535 -1.406 0.574 1.610 sum 5.529 7.984 -7.108 12.035 Atomic orbital electron populations 1.21239 0.93325 1.01130 1.01275 1.22055 0.94417 0.91793 1.03765 1.21443 1.00600 0.92424 1.02383 1.22180 0.98211 0.98779 0.94814 1.21292 0.93997 1.01136 0.99906 1.20998 0.98514 0.97148 0.98312 1.20743 0.93372 0.93394 0.89870 1.21658 0.95720 1.01135 0.99298 1.41875 1.24258 1.03431 1.64387 1.19362 1.03193 0.85160 1.26155 0.91463 1.25401 0.97774 1.01548 1.02353 1.69806 1.15251 1.33922 1.43460 0.85276 0.76498 0.81134 0.77772 1.21759 1.22537 1.19755 0.91874 0.92073 0.94342 0.90975 0.90976 0.92047 0.93034 0.91070 0.91577 0.94255 0.92177 0.94815 0.93707 0.89280 0.94200 0.79367 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.85 8.26 71.98 0.59 -3.26 16 2 C -0.12 -3.95 2.70 -52.15 -0.14 -4.09 16 3 C -0.11 -2.75 8.70 71.98 0.63 -2.13 16 4 C -0.14 -4.79 2.70 -52.16 -0.14 -4.93 16 5 C -0.11 -2.89 8.70 71.98 0.63 -2.26 16 6 C -0.09 -3.54 8.67 71.98 0.62 -2.91 16 7 C 0.12 4.69 2.64 3.60 0.01 4.70 16 8 C -0.12 -4.21 8.36 71.98 0.60 -3.61 16 9 N -0.70 -35.62 4.30 -303.33 -1.30 -36.92 16 10 C -0.21 -11.51 8.95 84.03 0.75 -10.76 16 11 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 12 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 13 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 14 Si 0.96 47.30 29.55 68.60 2.03 49.32 16 15 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 16 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 17 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 18 H 0.06 1.92 7.98 -2.38 -0.02 1.90 16 19 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 20 H 0.04 1.61 5.59 -2.38 -0.01 1.60 16 21 H 0.07 1.65 4.88 -2.39 -0.01 1.64 16 22 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.06 1.42 8.01 -2.39 -0.02 1.40 16 24 H 0.05 1.40 8.09 -2.39 -0.02 1.38 16 25 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.07 1.67 5.66 -2.39 -0.01 1.65 16 27 H 0.04 1.64 6.09 -2.39 -0.01 1.63 16 28 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 29 H 0.03 1.44 7.63 -2.38 -0.02 1.42 16 30 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.09 2.45 4.40 -2.39 -0.01 2.44 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.37 20.65 6.70 -92.71 -0.62 20.03 16 34 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -63.11 263.37 5.47 -57.64 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.45 Total: 23.42 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 4.02 Total: -33.39 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -1.02 Total: -96.99 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -63.11 5.47 -57.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885288177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.202 kcal (2) G-P(sol) polarization free energy of solvation -63.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds