Wall clock time and date at job start Mon Mar 30 2020 01:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46940 * 2 1 4 4 C 1.50695 * 109.47332 * 239.99880 * 2 1 3 5 5 H 1.08003 * 120.00427 * 244.75631 * 4 2 1 6 6 C 1.37886 * 119.99958 * 64.74790 * 4 2 1 7 7 N 1.31511 * 119.99604 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00075 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46952 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47152 * 120.00251 * 8 6 4 11 11 H 1.48492 * 109.47483 * 240.00444 * 8 6 4 12 12 N 1.46904 * 109.47059 * 119.99730 * 2 1 3 13 13 C 1.46891 * 111.00012 * 226.95910 * 12 2 1 14 14 C 1.53005 * 110.01883 * 64.06472 * 13 12 2 15 15 C 1.54268 * 110.03266 * 302.62249 * 13 12 2 16 16 C 1.54895 * 104.19761 * 217.10574 * 15 13 12 17 17 C 1.54884 * 102.74631 * 37.94434 * 16 15 13 18 18 C 1.53872 * 110.03424 * 185.45794 * 13 12 2 19 19 H 1.09002 * 109.47344 * 61.65832 * 1 2 3 20 20 H 1.08998 * 109.47306 * 301.65267 * 1 2 3 21 21 H 1.08999 * 109.46959 * 181.65523 * 1 2 3 22 22 H 0.97001 * 119.99864 * 179.97438 * 7 6 4 23 23 H 1.00896 * 110.99770 * 350.91513 * 12 2 1 24 24 H 1.09003 * 109.46686 * 54.67283 * 14 13 12 25 25 H 1.09002 * 109.47112 * 174.66542 * 14 13 12 26 26 H 1.08992 * 109.47105 * 294.67107 * 14 13 12 27 27 H 1.09005 * 110.48912 * 335.78682 * 15 13 12 28 28 H 1.09008 * 110.48488 * 98.42929 * 15 13 12 29 29 H 1.09003 * 110.75281 * 279.62928 * 16 15 13 30 30 H 1.09004 * 110.75320 * 156.25896 * 16 15 13 31 31 H 1.09002 * 110.48750 * 203.37879 * 17 16 15 32 32 H 1.08998 * 110.60256 * 80.78911 * 17 16 15 33 33 H 1.09002 * 110.03733 * 238.57144 * 18 13 12 34 34 H 1.08998 * 110.03017 * 359.95020 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5885 -1.6311 -1.1332 6 6 1.7819 -0.1850 -2.4804 7 7 1.1051 0.9363 -2.5987 8 14 2.4052 -1.0652 -4.0055 9 1 3.1333 -2.2957 -3.6041 10 1 1.2551 -1.4311 -4.8707 11 1 3.3224 -0.1690 -4.7542 12 7 2.0197 -0.6925 1.1995 13 6 3.0776 0.0834 1.8602 14 6 2.5133 1.4117 2.3684 15 6 4.2364 0.3426 0.8754 16 6 5.5098 0.2372 1.7509 17 6 5.1648 -0.9227 2.7176 18 6 3.6679 -0.7211 3.0316 19 1 -0.3634 0.4879 -0.9045 20 1 -0.3634 0.5393 0.8748 21 1 -0.3633 -1.0272 0.0297 22 1 0.9292 1.3062 -3.4780 23 1 1.2632 -0.8891 1.8376 24 1 1.6520 1.2195 3.0083 25 1 3.2793 1.9375 2.9385 26 1 2.2067 2.0242 1.5206 27 1 4.2481 -0.4154 0.0921 28 1 4.1529 1.3393 0.4419 29 1 5.6773 1.1626 2.3020 30 1 6.3780 -0.0132 1.1413 31 1 5.7589 -0.8496 3.6286 32 1 5.3268 -1.8860 2.2340 33 1 3.5532 -0.1649 3.9620 34 1 3.1688 -1.6868 3.1103 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042186960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:36 Heat of formation + Delta-G solvation = -18.438761 kcal Electronic energy + Delta-G solvation = -13386.700878 eV Core-core repulsion = 11318.551917 eV Total energy + Delta-G solvation = -2068.148960 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.59541 -34.67336 -32.17031 -29.74205 -28.22136 -26.92282 -25.07317 -24.15540 -20.81303 -19.68644 -18.07238 -16.12374 -15.35298 -14.69635 -14.52280 -13.66110 -13.17360 -12.92683 -12.85151 -12.03507 -11.88186 -11.47934 -11.20066 -10.88279 -10.67789 -10.62589 -10.44842 -10.28458 -10.23643 -10.07832 -10.00906 -9.78134 -9.44489 -9.01662 -8.29809 -7.10606 -5.90202 -3.91208 3.35189 3.43203 3.48653 4.50882 5.09514 5.18432 5.24474 5.41101 5.58390 5.84164 5.86901 5.95632 6.05802 6.13451 6.27298 6.34449 6.40733 6.50376 6.62506 6.65987 6.73590 6.77304 6.93197 6.97739 7.11527 7.25271 7.57805 7.75500 8.00610 8.39709 8.57645 8.82840 9.17182 9.72824 11.16939 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.011951 C = 0.010296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.458312 B = 2342.432870 C = 2718.754302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.207 3.793 3 H 0.023 0.977 4 C -0.481 4.481 5 H 0.061 0.939 6 C 0.052 3.948 7 N -0.900 5.900 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.675 5.675 13 C 0.114 3.886 14 C -0.173 4.173 15 C -0.103 4.103 16 C -0.127 4.127 17 C -0.117 4.117 18 C -0.113 4.113 19 H 0.080 0.920 20 H 0.005 0.995 21 H 0.032 0.968 22 H 0.257 0.743 23 H 0.315 0.685 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.690 -0.564 8.682 9.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.100 3.900 3 H 0.041 0.959 4 C -0.520 4.520 5 H 0.080 0.920 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.719 3.281 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.213 1.213 12 N -0.304 5.304 13 C 0.022 3.978 14 C -0.232 4.232 15 C -0.141 4.141 16 C -0.164 4.164 17 C -0.155 4.155 18 C -0.151 4.151 19 H 0.099 0.901 20 H 0.024 0.976 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.132 0.868 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.057 -0.851 8.176 9.651 hybrid contribution -0.368 0.418 -0.525 0.766 sum 4.689 -0.432 7.651 8.984 Atomic orbital electron populations 1.22114 0.99599 0.99027 1.00122 1.19215 0.90274 0.93513 0.86995 0.95916 1.21281 1.32806 1.08292 0.89618 0.92042 1.24972 0.95755 0.95158 0.98918 1.69923 1.41167 1.19837 1.23148 0.86556 0.78472 0.79777 0.83300 1.19783 1.21332 1.21333 1.61042 1.13312 1.47621 1.08473 1.21475 0.93308 0.90294 0.92702 1.22606 1.00078 0.99577 1.00973 1.22408 0.91565 1.02447 0.97692 1.22510 0.98442 0.97714 0.97779 1.22258 0.95892 0.98965 0.98400 1.22223 0.95599 1.00304 0.96941 0.90100 0.97591 0.94893 0.93336 0.86836 0.93708 0.93396 0.92078 0.88986 0.92486 0.92570 0.92256 0.92890 0.91741 0.92908 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.86 37.16 0.33 -3.29 16 2 C 0.21 5.15 1.75 -68.86 -0.12 5.03 16 3 H 0.02 0.62 5.53 -51.93 -0.29 0.34 16 4 C -0.48 -13.24 7.54 -34.44 -0.26 -13.50 16 5 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 6 C 0.05 1.44 5.32 -17.82 -0.09 1.35 16 7 N -0.90 -25.97 11.67 55.43 0.65 -25.32 16 8 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 N -0.68 -14.37 5.83 -93.13 -0.54 -14.91 16 13 C 0.11 2.11 0.81 -130.49 -0.11 2.01 16 14 C -0.17 -3.02 7.98 37.16 0.30 -2.72 16 15 C -0.10 -2.00 4.83 -25.07 -0.12 -2.12 16 16 C -0.13 -1.95 6.91 -24.74 -0.17 -2.12 16 17 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 18 C -0.11 -1.76 6.24 -25.61 -0.16 -1.92 16 19 H 0.08 2.16 6.42 -51.93 -0.33 1.82 16 20 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.32 6.27 8.15 -39.29 -0.32 5.95 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.20 6.53 -51.93 -0.34 0.86 16 27 H 0.09 2.05 6.88 -51.93 -0.36 1.70 16 28 H 0.06 1.16 7.72 -51.92 -0.40 0.76 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.74 7.67 -51.93 -0.40 0.35 16 34 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 LS Contribution 263.51 15.07 3.97 3.97 Total: -1.00 -28.03 263.51 -7.30 -35.33 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.77 Total: 3.39 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -0.58 Total: -19.18 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.10 Total: -40.23 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.03 -7.30 -35.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042186960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.895 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds