Wall clock time and date at job start Mon Mar 30 2020 01:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47485 * 2 1 4 4 C 1.50709 * 109.47235 * 119.99608 * 2 1 3 5 5 H 1.07997 * 119.99957 * 119.99745 * 4 2 1 6 6 C 1.37876 * 119.99837 * 299.72971 * 4 2 1 7 7 N 1.31510 * 120.00011 * 180.27288 * 6 4 2 8 8 Si 1.86797 * 120.00024 * 0.26952 * 6 4 2 9 9 H 1.48500 * 109.47557 * 90.00527 * 8 6 4 10 10 H 1.48505 * 109.47144 * 210.00589 * 8 6 4 11 11 H 1.48498 * 109.47275 * 330.00158 * 8 6 4 12 12 N 1.46895 * 109.47307 * 239.99691 * 2 1 3 13 13 C 1.48003 * 111.00331 * 190.51250 * 12 2 1 14 14 C 1.50440 * 112.82662 * 191.34689 * 13 12 2 15 15 C 1.54314 * 108.50398 * 93.72641 * 14 13 12 16 16 C 1.45871 * 112.18223 * 281.46474 * 15 14 13 17 17 C 1.54313 * 112.18876 * 61.11819 * 16 15 14 18 18 C 1.48001 * 110.99923 * 61.78771 * 12 2 1 19 19 H 1.09004 * 109.47545 * 53.22176 * 1 2 3 20 20 H 1.09003 * 109.47514 * 173.22497 * 1 2 3 21 21 H 1.09005 * 109.46967 * 293.22438 * 1 2 3 22 22 H 0.96999 * 120.00130 * 179.97438 * 7 6 4 23 23 H 1.09003 * 108.80693 * 312.20671 * 13 12 2 24 24 H 1.08994 * 108.81255 * 70.48108 * 13 12 2 25 25 H 1.08995 * 109.63374 * 334.02247 * 14 13 12 26 26 H 1.09002 * 109.63209 * 213.42998 * 14 13 12 27 27 H 1.08995 * 108.94109 * 160.76499 * 15 14 13 28 28 H 1.09001 * 108.93281 * 42.15718 * 15 14 13 29 29 H 1.09000 * 108.93985 * 300.41937 * 16 15 14 30 30 H 1.09001 * 108.93980 * 181.81818 * 16 15 14 31 31 H 1.09003 * 109.63779 * 161.76270 * 17 16 15 32 32 H 1.08998 * 109.63074 * 41.16549 * 17 16 15 33 33 H 1.09001 * 108.81200 * 205.69839 * 18 12 2 34 34 H 1.08995 * 108.81228 * 323.98043 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 2.1467 -0.8527 3.5566 8 14 0.6299 1.2828 2.6541 9 1 -0.7975 0.8766 2.7062 10 1 0.9858 2.0024 3.9035 11 1 0.8478 2.1771 1.4888 12 7 2.0196 -0.6925 -1.1993 13 6 3.4773 -0.9345 -1.1142 14 6 4.0704 -1.3905 -2.4194 15 6 4.6017 -0.1540 -3.1745 16 6 3.5331 0.5927 -3.8290 17 6 2.4962 1.1309 -2.8209 18 6 1.5806 0.0030 -2.4298 19 1 -0.3634 0.6153 -0.8231 20 1 -0.3634 -1.0205 -0.1212 21 1 -0.3633 0.4053 0.9444 22 1 1.9159 -0.5187 4.4375 23 1 3.9694 -0.0113 -0.8080 24 1 3.6634 -1.6970 -0.3580 25 1 3.3041 -1.8835 -3.0175 26 1 4.8904 -2.0824 -2.2271 27 1 5.3181 -0.4806 -3.9282 28 1 5.1092 0.5015 -2.4668 29 1 3.0286 -0.0614 -4.5402 30 1 3.9687 1.4323 -4.3707 31 1 1.9162 1.9297 -3.2832 32 1 3.0080 1.5106 -1.9366 33 1 1.5425 -0.7180 -3.2464 34 1 0.5793 0.4025 -2.2694 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048208880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:48 Heat of formation + Delta-G solvation = 1.524283 kcal Electronic energy + Delta-G solvation = -13490.389091 eV Core-core repulsion = 11423.105793 eV Total energy + Delta-G solvation = -2067.283298 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.83002 -35.00078 -32.25527 -31.64797 -29.83421 -25.88872 -25.22600 -23.61846 -20.97564 -19.93339 -18.56073 -16.74668 -15.85965 -15.08371 -14.52678 -13.89439 -13.48628 -13.24199 -12.76481 -12.68384 -12.19321 -12.00626 -11.76484 -11.66764 -10.80363 -10.67241 -10.52211 -10.39250 -10.21834 -10.14450 -9.95817 -9.71387 -9.41255 -8.90822 -8.53414 -7.10776 -6.03936 -4.02268 3.28150 3.38361 3.40475 4.42203 4.77073 4.98695 5.09816 5.27850 5.31707 5.57173 5.69875 5.86262 5.95006 5.99227 6.13016 6.26068 6.31717 6.37235 6.39097 6.46393 6.51859 6.54053 6.67856 6.69708 6.84563 6.89343 7.04261 7.38246 7.65706 8.05859 8.23776 8.72330 9.02718 9.58583 11.08646 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048173 B = 0.011696 C = 0.010510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.100895 B = 2393.459266 C = 2663.480210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.184 3.816 3 H -0.005 1.005 4 C -0.507 4.507 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.269 1.269 12 N -0.536 5.536 13 C 0.075 3.925 14 C -0.121 4.121 15 C -0.120 4.120 16 C -0.112 4.112 17 C -0.150 4.150 18 C 0.052 3.948 19 H 0.027 0.973 20 H 0.059 0.941 21 H 0.042 0.958 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 3.007 -12.258 12.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.077 3.923 3 H 0.013 0.987 4 C -0.545 4.545 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.194 1.194 12 N -0.261 5.261 13 C -0.052 4.052 14 C -0.159 4.159 15 C -0.158 4.158 16 C -0.149 4.149 17 C -0.189 4.189 18 C -0.076 4.076 19 H 0.046 0.954 20 H 0.078 0.922 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.054 2.564 -12.070 12.384 hybrid contribution -0.265 1.672 0.297 1.719 sum 0.789 4.236 -11.773 12.537 Atomic orbital electron populations 1.22207 0.98727 1.00957 0.98279 1.19628 0.91246 0.92583 0.88847 0.98714 1.21086 1.31867 1.13470 0.88055 0.89882 1.24946 0.95858 0.96603 0.95864 1.69882 1.45833 1.40365 0.97839 0.86883 0.80767 0.83870 0.76808 1.20558 1.22590 1.19426 1.61810 1.12958 1.49794 1.01509 1.21564 0.87288 1.00305 0.96024 1.21499 1.00045 0.96825 0.97496 1.20607 0.97950 0.97661 0.99580 1.20508 0.97116 0.99188 0.98096 1.21952 0.98370 0.99220 0.99376 1.21936 0.98090 0.93922 0.93652 0.95426 0.92154 0.93963 0.92700 0.95515 0.90283 0.91279 0.91883 0.92938 0.92413 0.92427 0.93156 0.92396 0.91604 0.92213 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.40 37.16 0.31 -2.93 16 2 C 0.18 4.46 1.60 -68.87 -0.11 4.35 16 3 H 0.00 -0.12 6.76 -51.93 -0.35 -0.47 16 4 C -0.51 -14.30 8.56 -34.44 -0.29 -14.59 16 5 H 0.08 2.53 6.29 -52.49 -0.33 2.20 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 8 Si 0.89 22.27 24.42 -169.99 -4.15 18.12 16 9 H -0.28 -6.82 6.82 56.52 0.39 -6.43 16 10 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 11 H -0.27 -6.55 6.52 56.52 0.37 -6.18 16 12 N -0.54 -11.28 4.57 -229.31 -1.05 -12.33 16 13 C 0.08 1.50 4.26 -4.49 -0.02 1.48 16 14 C -0.12 -1.88 5.63 -27.32 -0.15 -2.04 16 15 C -0.12 -1.66 5.30 -29.42 -0.16 -1.82 16 16 C -0.11 -1.49 5.30 -29.42 -0.16 -1.64 16 17 C -0.15 -2.33 5.58 -27.32 -0.15 -2.49 16 18 C 0.05 0.91 5.00 -4.49 -0.02 0.88 16 19 H 0.03 0.53 6.35 -51.93 -0.33 0.20 16 20 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 21 H 0.04 0.99 3.24 -51.93 -0.17 0.82 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.03 0.56 6.48 -51.93 -0.34 0.22 16 24 H 0.08 1.75 6.38 -51.93 -0.33 1.42 16 25 H 0.07 1.07 7.08 -51.93 -0.37 0.71 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.84 7.52 -51.93 -0.39 0.45 16 29 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.17 6.61 -51.93 -0.34 0.83 16 33 H 0.06 0.96 6.59 -51.93 -0.34 0.61 16 34 H 0.06 1.13 5.66 -51.93 -0.29 0.84 16 LS Contribution 243.98 15.07 3.68 3.68 Total: -1.00 -29.56 243.98 -6.87 -36.43 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.27 Total: -2.12 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.85 Total: -16.90 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: -0.27 Total: -39.21 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.15 Total: 18.12 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.56 -6.87 -36.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.950 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds