Wall clock time and date at job start Mon Mar 30 2020 01:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47485 * 2 1 4 4 C 1.50709 * 109.47235 * 119.99608 * 2 1 3 5 5 H 1.07997 * 119.99957 * 119.99745 * 4 2 1 6 6 C 1.37876 * 119.99837 * 299.72971 * 4 2 1 7 7 N 1.31510 * 120.00011 * 180.27288 * 6 4 2 8 8 Si 1.86797 * 120.00024 * 0.26952 * 6 4 2 9 9 H 1.48500 * 109.47557 * 90.00527 * 8 6 4 10 10 H 1.48505 * 109.47144 * 210.00589 * 8 6 4 11 11 H 1.48498 * 109.47275 * 330.00158 * 8 6 4 12 12 N 1.46895 * 109.47307 * 239.99691 * 2 1 3 13 13 C 1.48003 * 111.00331 * 190.51250 * 12 2 1 14 14 C 1.50440 * 112.82662 * 191.34689 * 13 12 2 15 15 C 1.54314 * 108.50398 * 93.72641 * 14 13 12 16 16 C 1.45871 * 112.18223 * 281.46474 * 15 14 13 17 17 C 1.54313 * 112.18876 * 61.11819 * 16 15 14 18 18 C 1.48001 * 110.99923 * 61.78771 * 12 2 1 19 19 H 1.09004 * 109.47545 * 53.22176 * 1 2 3 20 20 H 1.09003 * 109.47514 * 173.22497 * 1 2 3 21 21 H 1.09005 * 109.46967 * 293.22438 * 1 2 3 22 22 H 0.96999 * 120.00130 * 179.97438 * 7 6 4 23 23 H 1.09003 * 108.80693 * 312.20671 * 13 12 2 24 24 H 1.08994 * 108.81255 * 70.48108 * 13 12 2 25 25 H 1.08995 * 109.63374 * 334.02247 * 14 13 12 26 26 H 1.09002 * 109.63209 * 213.42998 * 14 13 12 27 27 H 1.08995 * 108.94109 * 160.76499 * 15 14 13 28 28 H 1.09001 * 108.93281 * 42.15718 * 15 14 13 29 29 H 1.09000 * 108.93985 * 300.41937 * 16 15 14 30 30 H 1.09001 * 108.93980 * 181.81818 * 16 15 14 31 31 H 1.09003 * 109.63779 * 161.76270 * 17 16 15 32 32 H 1.08998 * 109.63074 * 41.16549 * 17 16 15 33 33 H 1.09001 * 108.81200 * 205.69839 * 18 12 2 34 34 H 1.08995 * 108.81228 * 323.98043 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 2.1467 -0.8527 3.5566 8 14 0.6299 1.2828 2.6541 9 1 -0.7975 0.8766 2.7062 10 1 0.9858 2.0024 3.9035 11 1 0.8478 2.1771 1.4888 12 7 2.0196 -0.6925 -1.1993 13 6 3.4773 -0.9345 -1.1142 14 6 4.0704 -1.3905 -2.4194 15 6 4.6017 -0.1540 -3.1745 16 6 3.5331 0.5927 -3.8290 17 6 2.4962 1.1309 -2.8209 18 6 1.5806 0.0030 -2.4298 19 1 -0.3634 0.6153 -0.8231 20 1 -0.3634 -1.0205 -0.1212 21 1 -0.3633 0.4053 0.9444 22 1 1.9159 -0.5187 4.4375 23 1 3.9694 -0.0113 -0.8080 24 1 3.6634 -1.6970 -0.3580 25 1 3.3041 -1.8835 -3.0175 26 1 4.8904 -2.0824 -2.2271 27 1 5.3181 -0.4806 -3.9282 28 1 5.1092 0.5015 -2.4668 29 1 3.0286 -0.0614 -4.5402 30 1 3.9687 1.4323 -4.3707 31 1 1.9162 1.9297 -3.2832 32 1 3.0080 1.5106 -1.9366 33 1 1.5425 -0.7180 -3.2464 34 1 0.5793 0.4025 -2.2694 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048208880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:48 Heat of formation + Delta-G solvation = -18.844051 kcal Electronic energy + Delta-G solvation = -13491.272328 eV Core-core repulsion = 11423.105793 eV Total energy + Delta-G solvation = -2068.166535 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27031 -36.62597 -34.27449 -33.00859 -31.58335 -27.61639 -26.83369 -25.20285 -22.61448 -21.20279 -20.20322 -18.79586 -17.50219 -16.65523 -16.08505 -15.44856 -15.21523 -14.66303 -14.55095 -14.16193 -13.74907 -13.62682 -13.43973 -13.07285 -12.63039 -12.40184 -12.12766 -11.99679 -11.70820 -11.50710 -11.43247 -11.24546 -11.12923 -10.82116 -10.70354 -8.79652 -8.28519 -6.31710 1.28020 1.33149 1.43421 2.30696 3.04347 3.20962 3.84218 3.93024 4.09305 4.28773 4.40018 4.54138 4.57040 4.61972 4.72467 4.74513 4.81920 4.89141 4.94696 5.11246 5.15943 5.24007 5.27070 5.33576 5.40667 5.43039 5.52390 5.53841 5.68528 6.08161 6.46608 6.74956 6.83535 7.33630 8.87447 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.048173 B = 0.011696 C = 0.010510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.100895 B = 2393.459266 C = 2663.480210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.188 3.812 3 H -0.017 1.017 4 C -0.510 4.510 5 H 0.043 0.957 6 C 0.010 3.990 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.298 1.298 11 H -0.254 1.254 12 N -0.548 5.548 13 C 0.083 3.917 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.109 4.109 17 C -0.149 4.149 18 C 0.051 3.949 19 H 0.062 0.938 20 H 0.057 0.943 21 H 0.033 0.967 22 H 0.265 0.735 23 H 0.007 0.993 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 4.332 -14.866 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.080 3.920 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.061 0.939 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.776 3.224 9 H -0.189 1.189 10 H -0.226 1.226 11 H -0.178 1.178 12 N -0.274 5.274 13 C -0.045 4.045 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.188 4.188 18 C -0.077 4.077 19 H 0.081 0.919 20 H 0.076 0.924 21 H 0.051 0.949 22 H 0.074 0.926 23 H 0.025 0.975 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.154 3.887 -14.713 15.218 hybrid contribution 0.087 1.171 1.085 1.598 sum 0.241 5.057 -13.628 14.538 Atomic orbital electron populations 1.22110 0.96882 1.01563 0.99204 1.19448 0.92592 0.91373 0.88573 0.99915 1.21357 1.30917 1.12337 0.90236 0.93905 1.25800 0.97463 0.99966 0.95421 1.70034 1.47840 1.42552 0.98499 0.85848 0.79420 0.80002 0.77091 1.18904 1.22628 1.17804 1.61730 1.13362 1.50351 1.01938 1.21479 0.87133 0.98169 0.97684 1.21448 1.00321 0.98141 0.95219 1.20581 0.98699 0.96398 0.99732 1.20505 0.96394 1.00111 0.97629 1.21923 0.98700 0.99080 0.99068 1.22066 0.98473 0.94953 0.92170 0.91908 0.92412 0.94863 0.92586 0.97485 0.94211 0.90586 0.90829 0.90114 0.93767 0.90779 0.91058 0.90211 0.94515 0.90174 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 8.40 71.98 0.60 -5.43 16 2 C 0.19 9.09 1.60 44.17 0.07 9.17 16 3 H -0.02 -0.83 6.76 -2.39 -0.02 -0.85 16 4 C -0.51 -29.84 8.56 25.60 0.22 -29.62 16 5 H 0.04 2.78 6.29 -2.91 -0.02 2.76 16 6 C 0.01 0.62 5.45 84.66 0.46 1.08 16 7 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 8 Si 0.95 46.00 24.42 68.60 1.68 47.67 16 9 H -0.26 -12.04 6.82 99.48 0.68 -11.36 16 10 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 11 H -0.25 -11.57 6.52 99.48 0.65 -10.92 16 12 N -0.55 -22.89 4.57 -879.40 -4.02 -26.91 16 13 C 0.08 3.37 4.26 85.26 0.36 3.73 16 14 C -0.11 -3.38 5.63 30.21 0.17 -3.21 16 15 C -0.12 -2.89 5.30 28.85 0.15 -2.74 16 16 C -0.11 -2.48 5.30 28.85 0.15 -2.33 16 17 C -0.15 -4.20 5.58 30.21 0.17 -4.03 16 18 C 0.05 1.62 5.00 85.27 0.43 2.05 16 19 H 0.06 2.24 6.35 -2.39 -0.02 2.23 16 20 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 21 H 0.03 1.48 3.24 -2.38 -0.01 1.47 16 22 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 23 H 0.01 0.30 6.48 -2.39 -0.02 0.29 16 24 H 0.04 1.88 6.38 -2.39 -0.02 1.87 16 25 H 0.08 2.17 7.08 -2.39 -0.02 2.16 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.22 7.52 -2.39 -0.02 1.20 16 29 H 0.07 1.49 7.52 -2.39 -0.02 1.47 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.25 6.61 -2.39 -0.02 1.24 16 33 H 0.08 2.27 6.59 -2.39 -0.02 2.25 16 34 H 0.07 2.13 5.66 -2.39 -0.01 2.12 16 Total: -1.00 -65.78 243.98 1.73 -64.05 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 0.98 Total: 6.57 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 2.79 Total: -31.35 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -3.72 Total: -86.95 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.68 Total: 47.67 kcal Total: -65.78 1.73 -64.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.207 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds