Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46919 * 2 1 4 4 C 1.50700 * 109.46957 * 119.99929 * 2 1 3 5 5 H 1.07993 * 119.99724 * 120.00001 * 4 2 1 6 6 C 1.37883 * 119.99609 * 300.00069 * 4 2 1 7 7 N 1.31504 * 120.00110 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99434 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47131 * 60.00356 * 8 6 4 10 10 H 1.48498 * 109.46946 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47639 * 299.99927 * 8 6 4 12 12 N 1.46900 * 109.46973 * 239.99668 * 2 1 3 13 13 C 1.46901 * 111.00342 * 297.54571 * 12 2 1 14 14 C 1.46902 * 110.99860 * 173.59237 * 12 2 1 15 15 C 1.54263 * 110.03447 * 304.72502 * 14 12 2 16 16 C 1.54891 * 104.19902 * 217.10522 * 15 14 12 17 17 C 1.54893 * 102.74714 * 37.93855 * 16 15 14 18 18 C 1.53873 * 110.03464 * 187.55495 * 14 12 2 19 19 H 1.08991 * 109.47238 * 306.83926 * 1 2 3 20 20 H 1.09000 * 109.47028 * 66.83725 * 1 2 3 21 21 H 1.08999 * 109.47056 * 186.83737 * 1 2 3 22 22 H 0.97006 * 119.99911 * 180.02562 * 7 6 4 23 23 H 1.09003 * 109.46556 * 60.00447 * 13 12 2 24 24 H 1.08997 * 109.46849 * 179.97438 * 13 12 2 25 25 H 1.08998 * 109.46947 * 300.00390 * 13 12 2 26 26 H 1.09001 * 110.01464 * 66.16417 * 14 12 2 27 27 H 1.09004 * 110.48830 * 335.78101 * 15 14 12 28 28 H 1.09003 * 110.48829 * 98.41981 * 15 14 12 29 29 H 1.09004 * 110.75081 * 279.62536 * 16 15 14 30 30 H 1.09000 * 110.91731 * 156.32585 * 16 15 14 31 31 H 1.08994 * 110.48620 * 203.38291 * 17 16 15 32 32 H 1.09004 * 110.48434 * 80.73909 * 17 16 15 33 33 H 1.09000 * 110.03136 * 238.57274 * 18 14 12 34 34 H 1.09003 * 110.03233 * 359.95499 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1208 4.0082 10 1 1.8268 -0.4198 5.2204 11 1 1.8257 -2.5202 4.0078 12 7 2.0197 -0.6926 -1.1994 13 6 1.5972 -2.0995 -1.2043 14 6 3.4801 -0.5810 -1.3124 15 6 3.9004 0.9030 -1.2856 16 6 5.0796 0.9819 -2.2868 17 6 4.6378 0.0138 -3.4123 18 6 3.9489 -1.1464 -2.6645 19 1 -0.3633 0.6161 0.8224 20 1 -0.3633 0.4042 -0.9448 21 1 -0.3633 -1.0203 0.1223 22 1 0.7094 1.1619 3.4843 23 1 0.5085 -2.1519 -1.1905 24 1 1.9727 -2.5884 -2.1032 25 1 1.9965 -2.6018 -0.3232 26 1 3.9597 -1.1204 -0.4956 27 1 3.0780 1.5384 -1.6141 28 1 4.2287 1.1886 -0.2862 29 1 6.0041 0.6384 -1.8226 30 1 5.1957 1.9949 -2.6722 31 1 5.5042 -0.3496 -3.9649 32 1 3.9344 0.5056 -4.0842 33 1 4.6567 -1.9597 -2.5039 34 1 3.0929 -1.5043 -3.2366 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = -9.896900 kcal Electronic energy + Delta-G solvation = -13409.040270 eV Core-core repulsion = 11341.261713 eV Total energy + Delta-G solvation = -2067.778557 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.36513 -35.21930 -32.35352 -29.21740 -28.21430 -26.76716 -25.07715 -23.92486 -20.39400 -19.62547 -18.58314 -16.03556 -15.76421 -14.93579 -14.59596 -13.66438 -13.32779 -12.79749 -12.74456 -12.30689 -11.50670 -11.15542 -11.03776 -10.92299 -10.71131 -10.59622 -10.43500 -10.39712 -10.18709 -10.09635 -10.00673 -9.72286 -9.53454 -9.06547 -8.34860 -7.03779 -5.94821 -4.06481 3.29463 3.34578 3.37157 4.42662 5.10435 5.14764 5.23997 5.31362 5.49850 5.94541 6.05421 6.09631 6.20555 6.25903 6.33826 6.35482 6.44597 6.56501 6.61839 6.73831 6.85045 6.91312 7.00594 7.05694 7.11632 7.28914 7.65739 7.77125 8.03723 8.24418 8.42224 8.53093 9.03666 9.60294 11.05639 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.039508 B = 0.011474 C = 0.010739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.554122 B = 2439.633536 C = 2606.633253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.203 3.797 3 H 0.043 0.957 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.536 5.536 13 C 0.032 3.968 14 C 0.090 3.910 15 C -0.109 4.109 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.121 4.121 19 H 0.078 0.922 20 H 0.014 0.986 21 H 0.026 0.974 22 H 0.261 0.739 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.029 0.971 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 -1.654 -7.670 9.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.097 3.903 3 H 0.061 0.939 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.134 4.134 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.204 1.204 12 N -0.261 5.261 13 C -0.117 4.117 14 C -0.019 4.019 15 C -0.146 4.146 16 C -0.163 4.163 17 C -0.156 4.156 18 C -0.159 4.159 19 H 0.097 0.903 20 H 0.033 0.967 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.497 -1.302 -7.932 9.210 hybrid contribution 0.649 -0.966 1.782 2.128 sum 5.146 -2.268 -6.150 8.333 Atomic orbital electron populations 1.21765 0.97981 0.99808 0.99022 1.19305 0.92086 0.94534 0.84407 0.93896 1.21666 1.31649 1.12747 0.91782 0.92811 1.24894 0.94927 0.94861 0.98750 1.69885 1.36567 1.22736 1.23413 0.86769 0.79190 0.79892 0.82798 1.20414 1.21261 1.20420 1.62697 1.09116 1.12482 1.41757 1.22193 1.00383 0.90472 0.98660 1.22001 0.89671 0.95471 0.94749 1.22330 0.96934 0.96726 0.98643 1.22494 0.98467 0.98651 0.96730 1.22282 0.99117 0.96721 0.97467 1.22279 0.99404 0.97129 0.97040 0.90327 0.96735 0.95482 0.92951 0.92428 0.94094 0.95245 0.94079 0.91013 0.91747 0.92243 0.92287 0.92812 0.91906 0.93086 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.50 37.16 0.32 -2.85 16 2 C 0.20 5.12 2.08 -68.86 -0.14 4.97 16 3 H 0.04 1.18 6.42 -51.93 -0.33 0.84 16 4 C -0.54 -14.65 7.14 -34.44 -0.25 -14.89 16 5 H 0.05 1.48 5.83 -52.49 -0.31 1.17 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 7 N -0.89 -25.28 11.40 55.43 0.63 -24.65 16 8 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.54 -11.72 4.50 -226.96 -1.02 -12.75 16 13 C 0.03 0.64 8.68 60.07 0.52 1.17 16 14 C 0.09 1.79 2.32 -66.60 -0.15 1.64 16 15 C -0.11 -2.04 5.06 -25.07 -0.13 -2.17 16 16 C -0.13 -1.88 6.91 -24.74 -0.17 -2.05 16 17 C -0.12 -1.68 6.83 -25.07 -0.17 -1.86 16 18 C -0.12 -1.96 5.91 -25.61 -0.15 -2.11 16 19 H 0.08 2.11 6.29 -51.93 -0.33 1.78 16 20 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 21 H 0.03 0.65 6.82 -51.93 -0.35 0.29 16 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.06 1.17 6.52 -51.93 -0.34 0.83 16 24 H 0.04 0.72 6.45 -51.93 -0.34 0.39 16 25 H 0.03 0.64 6.32 -51.93 -0.33 0.31 16 26 H 0.04 0.91 7.11 -51.93 -0.37 0.54 16 27 H 0.07 1.42 7.47 -51.93 -0.39 1.03 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 LS Contribution 256.66 15.07 3.87 3.87 Total: -1.00 -27.73 256.66 -7.48 -35.21 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.52 Total: -1.71 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -0.42 Total: -16.37 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.39 Total: -37.40 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.73 -7.48 -35.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.310 kcal (2) G-P(sol) polarization free energy of solvation -27.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds