Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46919 * 2 1 4 4 C 1.50700 * 109.46957 * 119.99929 * 2 1 3 5 5 H 1.07993 * 119.99724 * 120.00001 * 4 2 1 6 6 C 1.37883 * 119.99609 * 300.00069 * 4 2 1 7 7 N 1.31504 * 120.00110 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99434 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47131 * 60.00356 * 8 6 4 10 10 H 1.48498 * 109.46946 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47639 * 299.99927 * 8 6 4 12 12 N 1.46900 * 109.46973 * 239.99668 * 2 1 3 13 13 C 1.46901 * 111.00342 * 297.54571 * 12 2 1 14 14 C 1.46902 * 110.99860 * 173.59237 * 12 2 1 15 15 C 1.54263 * 110.03447 * 304.72502 * 14 12 2 16 16 C 1.54891 * 104.19902 * 217.10522 * 15 14 12 17 17 C 1.54893 * 102.74714 * 37.93855 * 16 15 14 18 18 C 1.53873 * 110.03464 * 187.55495 * 14 12 2 19 19 H 1.08991 * 109.47238 * 306.83926 * 1 2 3 20 20 H 1.09000 * 109.47028 * 66.83725 * 1 2 3 21 21 H 1.08999 * 109.47056 * 186.83737 * 1 2 3 22 22 H 0.97006 * 119.99911 * 180.02562 * 7 6 4 23 23 H 1.09003 * 109.46556 * 60.00447 * 13 12 2 24 24 H 1.08997 * 109.46849 * 179.97438 * 13 12 2 25 25 H 1.08998 * 109.46947 * 300.00390 * 13 12 2 26 26 H 1.09001 * 110.01464 * 66.16417 * 14 12 2 27 27 H 1.09004 * 110.48830 * 335.78101 * 15 14 12 28 28 H 1.09003 * 110.48829 * 98.41981 * 15 14 12 29 29 H 1.09004 * 110.75081 * 279.62536 * 16 15 14 30 30 H 1.09000 * 110.91731 * 156.32585 * 16 15 14 31 31 H 1.08994 * 110.48620 * 203.38291 * 17 16 15 32 32 H 1.09004 * 110.48434 * 80.73909 * 17 16 15 33 33 H 1.09000 * 110.03136 * 238.57274 * 18 14 12 34 34 H 1.09003 * 110.03233 * 359.95499 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1203 4.0080 9 1 3.8063 -1.1208 4.0082 10 1 1.8268 -0.4198 5.2204 11 1 1.8257 -2.5202 4.0078 12 7 2.0197 -0.6926 -1.1994 13 6 1.5972 -2.0995 -1.2043 14 6 3.4801 -0.5810 -1.3124 15 6 3.9004 0.9030 -1.2856 16 6 5.0796 0.9819 -2.2868 17 6 4.6378 0.0138 -3.4123 18 6 3.9489 -1.1464 -2.6645 19 1 -0.3633 0.6161 0.8224 20 1 -0.3633 0.4042 -0.9448 21 1 -0.3633 -1.0203 0.1223 22 1 0.7094 1.1619 3.4843 23 1 0.5085 -2.1519 -1.1905 24 1 1.9727 -2.5884 -2.1032 25 1 1.9965 -2.6018 -0.3232 26 1 3.9597 -1.1204 -0.4956 27 1 3.0780 1.5384 -1.6141 28 1 4.2287 1.1886 -0.2862 29 1 6.0041 0.6384 -1.8226 30 1 5.1957 1.9949 -2.6722 31 1 5.5042 -0.3496 -3.9649 32 1 3.9344 0.5056 -4.0842 33 1 4.6567 -1.9597 -2.5039 34 1 3.0929 -1.5043 -3.2366 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = -26.446747 kcal Electronic energy + Delta-G solvation = -13409.757925 eV Core-core repulsion = 11341.261713 eV Total energy + Delta-G solvation = -2068.496213 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.95328 -36.87825 -34.34709 -31.06499 -29.65670 -28.27787 -27.18780 -25.61423 -22.04384 -21.08895 -20.27725 -18.08561 -17.40523 -16.51921 -16.35776 -15.25317 -15.10644 -14.56516 -14.15920 -13.99879 -13.43667 -12.99929 -12.77818 -12.69406 -12.55656 -12.19750 -12.13248 -11.84136 -11.80672 -11.68562 -11.45827 -11.40462 -11.20942 -11.06237 -10.47688 -8.90412 -8.04078 -6.25072 1.36050 1.36389 1.44007 2.38962 3.15353 3.47378 3.82990 3.92557 4.21530 4.58035 4.66166 4.67811 4.75784 4.82716 4.89140 4.94606 5.03038 5.08094 5.14681 5.15137 5.20189 5.25417 5.27818 5.38632 5.50525 5.57173 5.57357 5.74542 5.99776 6.23128 6.40513 6.73383 6.96297 7.45058 8.92239 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.039508 B = 0.011474 C = 0.010739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.554122 B = 2439.633536 C = 2606.633253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.207 3.793 3 H 0.015 0.985 4 C -0.547 4.547 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.274 1.274 12 N -0.536 5.536 13 C 0.035 3.965 14 C 0.084 3.916 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.110 4.110 18 C -0.114 4.114 19 H 0.054 0.946 20 H 0.029 0.971 21 H 0.026 0.974 22 H 0.261 0.739 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.012 0.988 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -2.445 -8.916 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.033 0.967 4 C -0.586 4.586 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.260 5.260 13 C -0.113 4.113 14 C -0.025 4.025 15 C -0.148 4.148 16 C -0.155 4.155 17 C -0.148 4.148 18 C -0.152 4.152 19 H 0.073 0.927 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.548 -2.101 -9.191 10.939 hybrid contribution 0.323 -0.710 2.153 2.290 sum 5.870 -2.811 -7.038 9.586 Atomic orbital electron populations 1.21597 0.97722 0.99273 0.98850 1.19095 0.92238 0.93328 0.85356 0.96705 1.21862 1.31397 1.12493 0.92860 0.93605 1.25603 0.95237 0.95598 1.01488 1.70004 1.37427 1.23801 1.23968 0.85825 0.78644 0.78899 0.79555 1.20119 1.20719 1.19956 1.62678 1.10586 1.13163 1.39553 1.22208 1.00302 0.89505 0.99289 1.22146 0.88101 0.96020 0.96215 1.22284 0.98244 0.95852 0.98431 1.22466 0.96855 1.00270 0.95860 1.22269 1.00118 0.95420 0.96996 1.22228 0.99964 0.98291 0.94694 0.92673 0.95162 0.95515 0.92945 0.92596 0.90851 0.97250 0.96948 0.92538 0.94516 0.91318 0.90469 0.89830 0.91460 0.91655 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.50 71.98 0.61 -5.21 16 2 C 0.21 10.66 2.08 44.17 0.09 10.75 16 3 H 0.02 0.85 6.42 -2.39 -0.02 0.84 16 4 C -0.55 -30.27 7.14 25.60 0.18 -30.09 16 5 H 0.05 2.57 5.83 -2.91 -0.02 2.55 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -52.95 11.40 21.45 0.24 -52.71 16 8 Si 0.94 44.29 29.54 68.60 2.03 46.32 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 12 N -0.54 -23.34 4.50 -871.96 -3.92 -27.26 16 13 C 0.04 1.41 8.68 127.69 1.11 2.52 16 14 C 0.08 3.30 2.32 45.64 0.11 3.41 16 15 C -0.11 -4.16 5.06 31.67 0.16 -4.00 16 16 C -0.12 -3.23 6.91 31.89 0.22 -3.01 16 17 C -0.11 -2.75 6.83 31.67 0.22 -2.53 16 18 C -0.11 -3.40 5.91 31.32 0.18 -3.22 16 19 H 0.05 3.01 6.29 -2.39 -0.02 3.00 16 20 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 21 H 0.03 1.29 6.82 -2.39 -0.02 1.27 16 22 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 23 H 0.06 2.21 6.52 -2.39 -0.02 2.20 16 24 H 0.07 2.42 6.45 -2.39 -0.02 2.41 16 25 H 0.01 0.39 6.32 -2.39 -0.02 0.38 16 26 H 0.01 0.56 7.11 -2.39 -0.02 0.54 16 27 H 0.06 2.27 7.47 -2.39 -0.02 2.26 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 2.12 6.66 -2.39 -0.02 2.10 16 Total: -1.00 -59.53 256.66 2.73 -56.80 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.05 Total: 6.63 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 3.33 Total: -29.78 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -3.68 Total: -79.97 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -59.53 2.73 -56.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.353 kcal (2) G-P(sol) polarization free energy of solvation -59.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds