Wall clock time and date at job start Mon Mar 30 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47478 * 2 1 4 4 C 1.50699 * 109.46880 * 239.99485 * 2 1 3 5 5 H 1.08007 * 119.99807 * 245.58220 * 4 2 1 6 6 C 1.37875 * 120.00004 * 65.58845 * 4 2 1 7 7 N 1.31514 * 120.00010 * 198.53650 * 6 4 2 8 8 Si 1.86796 * 120.00043 * 18.53808 * 6 4 2 9 9 H 1.48500 * 109.47360 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.46962 * 299.99945 * 8 6 4 11 11 H 1.48499 * 109.47375 * 59.99808 * 8 6 4 12 12 N 1.46904 * 109.46731 * 119.99833 * 2 1 3 13 13 C 1.46898 * 111.00311 * 58.95040 * 12 2 1 14 14 C 1.46907 * 111.00077 * 294.99985 * 12 2 1 15 15 C 1.54271 * 110.02699 * 297.16844 * 14 12 2 16 16 C 1.54894 * 104.19491 * 217.10347 * 15 14 12 17 17 C 1.54891 * 102.74397 * 37.94389 * 16 15 14 18 18 C 1.53867 * 110.03216 * 180.02562 * 14 12 2 19 19 H 1.09000 * 109.47713 * 174.98231 * 1 2 3 20 20 H 1.09005 * 109.47614 * 294.98719 * 1 2 3 21 21 H 1.09004 * 109.47161 * 54.98341 * 1 2 3 22 22 H 0.97001 * 119.99756 * 354.95799 * 7 6 4 23 23 H 1.09007 * 109.47023 * 59.99669 * 13 12 2 24 24 H 1.09000 * 109.47630 * 179.97438 * 13 12 2 25 25 H 1.08998 * 109.47292 * 300.00551 * 13 12 2 26 26 H 1.08998 * 110.01542 * 58.60415 * 14 12 2 27 27 H 1.08999 * 110.48734 * 335.78029 * 15 14 12 28 28 H 1.09005 * 110.48468 * 98.43125 * 15 14 12 29 29 H 1.09003 * 110.75624 * 279.63681 * 16 15 14 30 30 H 1.08991 * 110.75734 * 156.25592 * 16 15 14 31 31 H 1.09005 * 110.48527 * 203.37956 * 17 16 15 32 32 H 1.08994 * 110.49111 * 80.73905 * 17 16 15 33 33 H 1.09009 * 110.03160 * 238.56650 * 18 14 12 34 34 H 1.09003 * 110.03400 * 359.97438 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.5768 -1.6383 -1.1338 6 6 1.7967 -0.1762 -2.4794 7 7 1.8956 -0.9355 -3.5487 8 14 1.3373 1.6260 -2.6529 9 1 1.1388 1.9504 -4.0883 10 1 0.0808 1.8905 -1.9068 11 1 2.4274 2.4701 -2.1013 12 7 2.0196 -0.6925 1.1995 13 6 1.5281 -2.0761 1.2462 14 6 1.6485 0.0392 2.4182 15 6 2.3166 1.4298 2.4235 16 6 2.6894 1.6664 3.9082 17 6 3.1393 0.2600 4.3758 18 6 2.1722 -0.7042 3.6594 19 1 -0.3634 -1.0237 -0.0899 20 1 -0.3634 0.4341 0.9315 21 1 -0.3634 0.5897 -0.8417 22 1 2.2049 -1.8511 -3.4664 23 1 1.8760 -2.6151 0.3649 24 1 1.9058 -2.5658 2.1437 25 1 0.4383 -2.0741 1.2640 26 1 0.5651 0.1445 2.4749 27 1 3.2116 1.4254 1.8015 28 1 1.6159 2.1909 2.0802 29 1 1.8215 2.0027 4.4755 30 1 3.5077 2.3814 3.9917 31 1 3.0391 0.1674 5.4573 32 1 4.1672 0.0667 4.0691 33 1 1.3429 -0.9595 4.3192 34 1 2.7012 -1.6082 3.3576 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:50 Heat of formation + Delta-G solvation = -4.802890 kcal Electronic energy + Delta-G solvation = -13382.514508 eV Core-core repulsion = 11314.956843 eV Total energy + Delta-G solvation = -2067.557665 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.71380 -35.46337 -32.42513 -29.75200 -28.38742 -27.13930 -24.91046 -23.98340 -20.58757 -19.89411 -18.31128 -17.22996 -15.99818 -15.19665 -14.35761 -13.81906 -13.43036 -13.08553 -12.96202 -12.66956 -11.81038 -11.55526 -11.35454 -11.26876 -10.80478 -10.68460 -10.66192 -10.39496 -10.32545 -10.23564 -10.15808 -9.69090 -9.64539 -8.88538 -8.09175 -7.21246 -6.40562 -3.97411 3.39362 3.45772 3.62390 4.52586 4.83519 4.91527 5.00337 5.27798 5.33651 5.70970 5.81689 5.87205 5.91160 6.01227 6.12580 6.14379 6.20230 6.33057 6.38306 6.40847 6.44407 6.51566 6.56635 6.70886 6.74506 6.85857 7.06436 7.36120 7.83644 8.15028 8.41007 8.52711 9.03966 9.69132 11.00302 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046208 B = 0.011458 C = 0.010184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.816281 B = 2443.047068 C = 2748.772504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.186 3.814 3 H 0.033 0.967 4 C -0.585 4.585 5 H 0.063 0.937 6 C 0.029 3.971 7 N -0.909 5.909 8 Si 1.043 2.957 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.283 1.283 12 N -0.520 5.520 13 C 0.033 3.967 14 C 0.073 3.927 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.121 4.121 19 H 0.047 0.953 20 H 0.022 0.978 21 H 0.056 0.944 22 H 0.266 0.734 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.015 0.985 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 3.416 13.180 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.078 3.922 3 H 0.051 0.949 4 C -0.623 4.623 5 H 0.081 0.919 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.872 3.128 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.243 5.243 13 C -0.116 4.116 14 C -0.036 4.036 15 C -0.154 4.154 16 C -0.161 4.161 17 C -0.156 4.156 18 C -0.159 4.159 19 H 0.066 0.934 20 H 0.041 0.959 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.568 4.539 12.029 12.870 hybrid contribution -0.539 -1.197 1.113 1.721 sum -1.106 3.342 13.142 13.606 Atomic orbital electron populations 1.22859 1.01699 1.00968 0.99068 1.19608 0.88956 0.94925 0.88737 0.94944 1.21973 1.39715 1.10176 0.90472 0.91923 1.25662 0.94806 1.04963 0.92167 1.70867 1.42553 1.09352 1.31631 0.84078 0.76980 0.75806 0.75896 1.21239 1.20285 1.20904 1.62427 1.58881 1.01693 1.01321 1.22278 0.96895 0.91187 1.01197 1.22286 0.96645 0.93720 0.90979 1.22416 1.01248 0.95808 0.95900 1.22468 1.00246 0.96840 0.96572 1.22280 0.99569 0.95076 0.98722 1.22285 0.98484 0.99254 0.95872 0.93357 0.95897 0.92536 0.92352 0.90856 0.93438 0.96668 0.94731 0.90195 0.92429 0.92149 0.91953 0.92524 0.91613 0.92826 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.25 8.14 37.16 0.30 -3.95 16 2 C 0.19 4.49 1.77 -68.86 -0.12 4.37 16 3 H 0.03 0.80 5.59 -51.93 -0.29 0.51 16 4 C -0.59 -16.54 8.31 -34.44 -0.29 -16.82 16 5 H 0.06 1.92 6.78 -52.48 -0.36 1.56 16 6 C 0.03 0.83 5.34 -17.82 -0.10 0.74 16 7 N -0.91 -28.12 13.70 55.43 0.76 -27.36 16 8 Si 1.04 25.48 26.45 -169.99 -4.50 20.99 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.26 5.54 56.52 0.31 -5.94 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.52 -11.16 4.53 -226.95 -1.03 -12.19 16 13 C 0.03 0.66 8.57 60.06 0.51 1.17 16 14 C 0.07 1.30 2.40 -66.59 -0.16 1.14 16 15 C -0.12 -1.93 5.19 -25.07 -0.13 -2.06 16 16 C -0.12 -1.63 6.91 -24.73 -0.17 -1.80 16 17 C -0.12 -1.55 6.83 -25.10 -0.17 -1.73 16 18 C -0.12 -1.82 5.90 -25.64 -0.15 -1.97 16 19 H 0.05 1.11 6.67 -51.93 -0.35 0.76 16 20 H 0.02 0.46 6.28 -51.93 -0.33 0.13 16 21 H 0.06 1.32 4.88 -51.93 -0.25 1.07 16 22 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 23 H 0.07 1.64 6.43 -51.92 -0.33 1.31 16 24 H 0.05 0.82 5.97 -51.93 -0.31 0.51 16 25 H 0.01 0.30 6.40 -51.93 -0.33 -0.03 16 26 H 0.03 0.64 6.31 -51.93 -0.33 0.31 16 27 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 34 H 0.07 1.17 6.10 -51.93 -0.32 0.86 16 LS Contribution 250.69 15.07 3.78 3.78 Total: -1.00 -29.61 250.69 -6.84 -36.45 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.38 Total: -0.77 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.47 Total: -20.90 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: -0.27 Total: -39.54 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -4.50 Total: 20.99 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.61 -6.84 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.650 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds