Wall clock time and date at job start Mon Mar 30 2020 01:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47478 * 2 1 4 4 C 1.50699 * 109.46880 * 239.99485 * 2 1 3 5 5 H 1.08007 * 119.99807 * 245.58220 * 4 2 1 6 6 C 1.37875 * 120.00004 * 65.58845 * 4 2 1 7 7 N 1.31514 * 120.00010 * 198.53650 * 6 4 2 8 8 Si 1.86796 * 120.00043 * 18.53808 * 6 4 2 9 9 H 1.48500 * 109.47360 * 179.97438 * 8 6 4 10 10 H 1.48504 * 109.46962 * 299.99945 * 8 6 4 11 11 H 1.48499 * 109.47375 * 59.99808 * 8 6 4 12 12 N 1.46904 * 109.46731 * 119.99833 * 2 1 3 13 13 C 1.46898 * 111.00311 * 58.95040 * 12 2 1 14 14 C 1.46907 * 111.00077 * 294.99985 * 12 2 1 15 15 C 1.54271 * 110.02699 * 297.16844 * 14 12 2 16 16 C 1.54894 * 104.19491 * 217.10347 * 15 14 12 17 17 C 1.54891 * 102.74397 * 37.94389 * 16 15 14 18 18 C 1.53867 * 110.03216 * 180.02562 * 14 12 2 19 19 H 1.09000 * 109.47713 * 174.98231 * 1 2 3 20 20 H 1.09005 * 109.47614 * 294.98719 * 1 2 3 21 21 H 1.09004 * 109.47161 * 54.98341 * 1 2 3 22 22 H 0.97001 * 119.99756 * 354.95799 * 7 6 4 23 23 H 1.09007 * 109.47023 * 59.99669 * 13 12 2 24 24 H 1.09000 * 109.47630 * 179.97438 * 13 12 2 25 25 H 1.08998 * 109.47292 * 300.00551 * 13 12 2 26 26 H 1.08998 * 110.01542 * 58.60415 * 14 12 2 27 27 H 1.08999 * 110.48734 * 335.78029 * 15 14 12 28 28 H 1.09005 * 110.48468 * 98.43125 * 15 14 12 29 29 H 1.09003 * 110.75624 * 279.63681 * 16 15 14 30 30 H 1.08991 * 110.75734 * 156.25592 * 16 15 14 31 31 H 1.09005 * 110.48527 * 203.37956 * 17 16 15 32 32 H 1.08994 * 110.49111 * 80.73905 * 17 16 15 33 33 H 1.09009 * 110.03160 * 238.56650 * 18 14 12 34 34 H 1.09003 * 110.03400 * 359.97438 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.5768 -1.6383 -1.1338 6 6 1.7967 -0.1762 -2.4794 7 7 1.8956 -0.9355 -3.5487 8 14 1.3373 1.6260 -2.6529 9 1 1.1388 1.9504 -4.0883 10 1 0.0808 1.8905 -1.9068 11 1 2.4274 2.4701 -2.1013 12 7 2.0196 -0.6925 1.1995 13 6 1.5281 -2.0761 1.2462 14 6 1.6485 0.0392 2.4182 15 6 2.3166 1.4298 2.4235 16 6 2.6894 1.6664 3.9082 17 6 3.1393 0.2600 4.3758 18 6 2.1722 -0.7042 3.6594 19 1 -0.3634 -1.0237 -0.0899 20 1 -0.3634 0.4341 0.9315 21 1 -0.3634 0.5897 -0.8417 22 1 2.2049 -1.8511 -3.4664 23 1 1.8760 -2.6151 0.3649 24 1 1.9058 -2.5658 2.1437 25 1 0.4383 -2.0741 1.2640 26 1 0.5651 0.1445 2.4749 27 1 3.2116 1.4254 1.8015 28 1 1.6159 2.1909 2.0802 29 1 1.8215 2.0027 4.4755 30 1 3.5077 2.3814 3.9917 31 1 3.0391 0.1674 5.4573 32 1 4.1672 0.0667 4.0691 33 1 1.3429 -0.9595 4.3192 34 1 2.7012 -1.6082 3.3576 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:50 Heat of formation + Delta-G solvation = -24.557036 kcal Electronic energy + Delta-G solvation = -13383.371112 eV Core-core repulsion = 11314.956843 eV Total energy + Delta-G solvation = -2068.414269 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.18368 -37.00091 -34.51754 -31.52395 -29.68223 -28.49722 -26.89581 -25.69860 -22.15064 -21.19754 -19.92528 -19.29570 -17.54290 -16.53314 -15.98783 -15.36835 -15.23052 -14.79384 -14.38933 -14.18896 -13.62888 -13.44567 -13.13289 -12.77550 -12.38913 -12.08775 -11.98424 -11.82791 -11.75992 -11.70528 -11.49521 -11.41773 -11.30908 -10.99518 -10.30504 -8.90839 -8.71464 -6.29797 1.43488 1.52458 1.70679 2.49041 3.08950 3.29666 3.73732 3.84448 4.13171 4.42936 4.45253 4.51277 4.60422 4.64830 4.71291 4.72901 4.76748 4.87690 4.93761 4.97566 5.09341 5.12287 5.20140 5.25962 5.32380 5.40337 5.52395 5.55939 5.88982 6.07709 6.32866 6.67658 6.78449 7.46572 8.67199 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.046208 B = 0.011458 C = 0.010184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.816281 B = 2443.047068 C = 2748.772504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.188 3.812 3 H 0.034 0.966 4 C -0.585 4.585 5 H 0.022 0.978 6 C -0.023 4.023 7 N -0.941 5.941 8 Si 1.081 2.919 9 H -0.290 1.290 10 H -0.244 1.244 11 H -0.265 1.265 12 N -0.537 5.537 13 C 0.039 3.961 14 C 0.067 3.933 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.119 4.119 19 H 0.036 0.964 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.250 0.750 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.017 0.983 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 5.218 15.777 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.079 3.921 3 H 0.052 0.948 4 C -0.623 4.623 5 H 0.041 0.959 6 C -0.221 4.221 7 N -0.578 5.578 8 Si 0.903 3.097 9 H -0.216 1.216 10 H -0.169 1.169 11 H -0.190 1.190 12 N -0.260 5.260 13 C -0.109 4.109 14 C -0.041 4.041 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.153 4.153 18 C -0.156 4.156 19 H 0.055 0.945 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.295 6.325 14.665 16.023 hybrid contribution -0.256 -1.856 0.354 1.906 sum -1.551 4.469 15.018 15.746 Atomic orbital electron populations 1.22699 1.00234 1.00468 1.00349 1.19420 0.89860 0.94467 0.88316 0.94792 1.22172 1.38589 1.08806 0.92748 0.95930 1.27099 0.94546 1.08510 0.91928 1.71001 1.45152 1.08885 1.32773 0.83623 0.78782 0.71038 0.76250 1.21604 1.16875 1.18998 1.62330 1.59459 1.02231 1.02000 1.22194 0.96941 0.90766 1.00994 1.22476 0.96890 0.94478 0.90251 1.22446 1.00115 0.95131 0.98215 1.22447 1.01487 0.97290 0.93931 1.22282 0.98566 0.94300 1.00143 1.22277 0.99496 0.98909 0.94949 0.94483 0.92968 0.93068 0.94119 0.94367 0.90421 0.96440 0.94726 0.92628 0.92223 0.90315 0.90587 0.89797 0.92319 0.90822 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.81 8.14 71.98 0.59 -7.22 16 2 C 0.19 8.98 1.77 44.17 0.08 9.05 16 3 H 0.03 1.63 5.59 -2.39 -0.01 1.62 16 4 C -0.58 -33.93 8.31 25.60 0.21 -33.72 16 5 H 0.02 1.45 6.78 -2.91 -0.02 1.43 16 6 C -0.02 -1.38 5.34 84.65 0.45 -0.93 16 7 N -0.94 -60.16 13.70 21.45 0.29 -59.87 16 8 Si 1.08 50.67 26.45 68.60 1.81 52.48 16 9 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 10 H -0.24 -10.14 5.54 99.48 0.55 -9.59 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 N -0.54 -22.66 4.53 -871.94 -3.95 -26.61 16 13 C 0.04 1.58 8.57 127.69 1.09 2.67 16 14 C 0.07 2.24 2.40 45.64 0.11 2.35 16 15 C -0.12 -3.72 5.19 31.67 0.16 -3.56 16 16 C -0.11 -2.56 6.91 31.89 0.22 -2.34 16 17 C -0.12 -2.58 6.83 31.65 0.22 -2.36 16 18 C -0.12 -3.17 5.90 31.30 0.18 -2.99 16 19 H 0.04 1.67 6.67 -2.39 -0.02 1.65 16 20 H 0.05 1.96 6.28 -2.38 -0.01 1.94 16 21 H 0.05 2.27 4.88 -2.38 -0.01 2.26 16 22 H 0.25 16.25 8.73 -92.71 -0.81 15.45 16 23 H 0.04 1.77 6.43 -2.38 -0.02 1.75 16 24 H 0.08 2.61 5.97 -2.39 -0.01 2.59 16 25 H 0.02 0.68 6.40 -2.39 -0.02 0.66 16 26 H 0.03 1.16 6.31 -2.39 -0.02 1.15 16 27 H 0.05 1.97 7.92 -2.39 -0.02 1.95 16 28 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.06 1.85 6.10 -2.39 -0.01 1.83 16 Total: -1.00 -65.29 250.69 2.35 -62.95 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.87 Total: 10.08 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 3.32 Total: -39.04 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -3.66 Total: -86.47 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.81 Total: 52.48 kcal Total: -65.29 2.35 -62.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.389 kcal (2) G-P(sol) polarization free energy of solvation -65.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds