Wall clock time and date at job start Mon Mar 30 2020 02:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86804 * 120.00085 * 2 1 4 4 H 1.48505 * 109.46660 * 239.99946 * 3 2 1 5 5 H 1.48498 * 109.47166 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47299 * 120.00205 * 3 2 1 7 7 C 1.39888 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99867 * 197.93908 * 7 2 1 9 9 C 1.41209 * 119.99837 * 17.93697 * 7 2 1 10 10 C 1.40859 * 120.17064 * 204.53855 * 9 7 2 11 11 C 1.36437 * 119.83055 * 179.74928 * 10 9 7 12 12 C 1.39301 * 120.19297 * 0.54424 * 11 10 9 13 13 O 1.35696 * 119.81900 * 179.72027 * 12 11 10 14 14 C 1.39405 * 120.35385 * 359.45242 * 12 11 10 15 15 Cl 1.73603 * 119.91822 * 180.29292 * 14 12 11 16 16 C 1.36535 * 120.16735 * 0.26921 * 14 12 11 17 17 H 0.97001 * 119.99812 * 0.02562 * 1 2 3 18 18 H 1.08003 * 120.08518 * 0.02562 * 10 9 7 19 19 H 1.07999 * 119.90579 * 180.27557 * 11 10 9 20 20 H 0.96699 * 114.00227 * 269.73021 * 13 12 11 21 21 H 1.08000 * 120.10263 * 179.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0966 1.6963 -1.2126 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6964 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0488 -1.2341 0.2886 9 6 1.3535 -2.4048 -0.3756 10 6 1.8265 -3.6480 0.0879 11 6 1.1856 -4.7963 -0.2756 12 6 0.0730 -4.7429 -1.1121 13 8 -0.5553 -5.8901 -1.4735 14 6 -0.4018 -3.5168 -1.5754 15 17 -1.7939 -3.4628 -2.6113 16 6 0.2249 -2.3582 -1.2162 17 1 -0.4850 0.8401 -0.0004 18 1 2.6915 -3.6919 0.7331 19 1 1.5445 -5.7499 0.0826 20 1 -0.2128 -6.2869 -2.2861 21 1 -0.1436 -1.4089 -1.5760 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062718307.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:17 Heat of formation + Delta-G solvation = -60.346889 kcal Electronic energy + Delta-G solvation = -10173.664819 eV Core-core repulsion = 8039.189805 eV Total energy + Delta-G solvation = -2134.475014 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 198.019 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.08146 -37.56802 -37.14138 -35.18283 -31.30599 -30.98614 -26.82960 -23.22023 -22.70596 -19.41814 -18.97830 -17.32041 -16.25946 -16.11882 -15.93815 -14.72696 -14.38887 -13.72800 -13.65222 -13.17038 -12.86429 -12.60287 -12.40803 -12.11420 -11.82827 -11.56111 -11.12129 -10.92860 -9.47248 -9.26744 -8.72705 -6.41222 0.65789 0.89775 1.39863 1.45597 1.51584 1.53734 2.18436 2.57424 3.48306 3.75063 4.32792 4.78270 4.98171 5.05440 5.22071 5.34904 5.58299 5.81913 5.91511 6.11086 6.44454 6.75373 6.80311 7.17059 8.23520 Molecular weight = 198.02amu Principal moments of inertia in cm(-1) A = 0.049103 B = 0.011997 C = 0.009915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.095238 B = 2333.261097 C = 2823.348391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.483 4.483 8 H 0.090 0.910 9 C 0.084 3.916 10 C -0.222 4.222 11 C -0.094 4.094 12 C -0.040 4.040 13 O -0.495 6.495 14 C -0.029 4.029 15 Cl -0.095 7.095 16 C -0.177 4.177 17 H 0.292 0.708 18 H 0.118 0.882 19 H 0.135 0.865 20 H 0.381 0.619 21 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -1.642 -2.546 3.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.511 4.511 8 H 0.108 0.892 9 C 0.081 3.919 10 C -0.242 4.242 11 C -0.113 4.113 12 C -0.086 4.086 13 O -0.304 6.304 14 C -0.056 4.056 15 Cl -0.067 7.067 16 C -0.198 4.198 17 H 0.103 0.897 18 H 0.136 0.864 19 H 0.153 0.847 20 H 0.235 0.765 21 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.293 -1.386 -2.105 2.832 hybrid contribution 0.180 0.604 -0.497 0.802 sum 1.473 -0.783 -2.601 3.090 Atomic orbital electron populations 1.69884 1.09265 1.31236 1.33790 1.26880 0.95445 1.04944 0.90942 0.85176 0.78723 0.75121 0.80334 1.18255 1.19434 1.17940 1.19870 0.98905 0.91947 1.40366 0.89189 1.17933 0.91064 0.93826 0.89068 1.20952 1.04355 0.92213 1.06668 1.20825 0.93836 0.98823 0.97774 1.17851 0.99033 0.83845 1.07844 1.84773 1.61344 1.37298 1.47016 1.21148 0.91161 0.95421 0.97889 1.98246 1.42660 1.98924 1.66836 1.20892 1.00299 0.95893 1.02673 0.89686 0.86362 0.84712 0.76500 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.61 10.96 21.82 0.24 -41.37 14 2 C 0.03 1.66 5.13 85.23 0.44 2.10 14 3 Si 0.99 36.15 29.60 68.60 2.03 38.18 14 4 H -0.26 -9.25 7.11 99.48 0.71 -8.55 14 5 H -0.27 -9.49 7.11 99.48 0.71 -8.78 14 6 H -0.26 -8.96 7.11 99.48 0.71 -8.25 14 7 C -0.48 -24.55 9.04 23.40 0.21 -24.34 14 8 H 0.09 4.29 7.91 -2.91 -0.02 4.26 14 9 C 0.08 4.37 5.57 -21.28 -0.12 4.25 14 10 C -0.22 -10.31 9.74 22.49 0.22 -10.09 14 11 C -0.09 -4.01 9.92 22.10 0.22 -3.79 14 12 C -0.04 -1.77 6.72 22.81 0.15 -1.62 14 13 O -0.50 -19.04 12.93 -90.15 -1.17 -20.21 14 14 C -0.03 -1.40 6.29 22.15 0.14 -1.26 14 15 Cl -0.10 -3.99 28.48 -2.72 -0.08 -4.07 14 16 C -0.18 -9.26 8.41 22.50 0.19 -9.07 14 17 H 0.29 13.49 8.30 -92.71 -0.77 12.72 14 18 H 0.12 4.97 8.06 -2.91 -0.02 4.94 14 19 H 0.14 4.82 8.06 -2.91 -0.02 4.80 14 20 H 0.38 10.93 9.06 -74.06 -0.67 10.26 14 21 H 0.12 6.29 6.16 -2.91 -0.02 6.27 14 Total: -1.00 -56.66 211.66 3.07 -53.59 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.59 Total: 17.68 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 1.45 Total: -43.81 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.24 Total: -41.37 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.17 Total: -20.21 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Atomic # 17 Polarization: -3.99 SS G_CDS: -0.08 Total: -4.07 kcal Total: -56.66 3.07 -53.59 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062718307.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.757 kcal (2) G-P(sol) polarization free energy of solvation -56.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds