Wall clock time and date at job start Mon Mar 30 2020 01:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.47072 * 2 1 4 4 C 1.50696 * 109.47048 * 119.99603 * 2 1 3 5 5 H 1.08004 * 119.99813 * 119.99833 * 4 2 1 6 6 C 1.37878 * 120.00772 * 300.00279 * 4 2 1 7 7 N 1.31522 * 119.99494 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00398 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46898 * 90.00171 * 8 6 4 10 10 H 1.48499 * 109.46763 * 209.99844 * 8 6 4 11 11 H 1.48497 * 109.47068 * 329.99693 * 8 6 4 12 12 N 1.46893 * 109.47141 * 240.00049 * 2 1 3 13 13 C 1.47846 * 111.00192 * 201.90140 * 12 2 1 14 14 C 1.54910 * 104.79538 * 213.63710 * 13 12 2 15 15 C 1.55131 * 101.65464 * 37.06860 * 14 13 12 16 16 C 1.47440 * 111.00016 * 81.05731 * 12 2 1 17 17 C 1.53001 * 109.88853 * 242.66318 * 16 12 2 18 18 C 1.53001 * 109.89244 * 3.68822 * 16 12 2 19 19 H 1.08994 * 109.47002 * 190.50875 * 1 2 3 20 20 H 1.09001 * 109.46866 * 310.50256 * 1 2 3 21 21 H 1.08995 * 109.46863 * 70.50486 * 1 2 3 22 22 H 0.96996 * 119.99901 * 180.02562 * 7 6 4 23 23 H 1.09007 * 110.36971 * 332.46158 * 13 12 2 24 24 H 1.08997 * 110.37793 * 94.80267 * 13 12 2 25 25 H 1.08990 * 110.98993 * 278.97455 * 14 13 12 26 26 H 1.09002 * 111.01935 * 155.17426 * 14 13 12 27 27 H 1.08994 * 110.70912 * 205.96340 * 15 14 13 28 28 H 1.09007 * 110.71077 * 82.73005 * 15 14 13 29 29 H 1.08997 * 109.47386 * 60.00265 * 17 16 12 30 30 H 1.09008 * 109.47273 * 179.97438 * 17 16 12 31 31 H 1.08996 * 109.47319 * 299.99830 * 17 16 12 32 32 H 1.09000 * 109.47080 * 63.08943 * 18 16 12 33 33 H 1.08993 * 109.47406 * 183.09313 * 18 16 12 34 34 H 1.09002 * 109.46694 * 303.09721 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6035 8 14 2.3214 -1.1203 4.0080 9 1 3.6297 -0.5458 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7120 12 7 2.0197 -0.6924 -1.1994 13 6 3.4037 -1.1747 -1.0049 14 6 4.0629 -1.0590 -2.4020 15 6 3.4281 0.2500 -2.9406 16 6 1.9941 0.2004 -2.3724 17 6 1.0351 -0.3541 -3.4277 18 6 1.5491 1.6020 -1.9502 19 1 -0.3633 -1.0104 0.1874 20 1 -0.3633 0.6675 0.7814 21 1 -0.3633 0.3429 -0.9687 22 1 0.7087 1.1613 3.4844 23 1 3.9272 -0.5453 -0.2851 24 1 3.4008 -2.2124 -0.6714 25 1 3.7976 -1.9090 -3.0304 26 1 5.1452 -0.9618 -2.3168 27 1 3.4110 0.2500 -4.0304 28 1 3.9625 1.1216 -2.5625 29 1 0.0321 -0.4233 -3.0067 30 1 1.0210 0.3110 -4.2913 31 1 1.3684 -1.3446 -3.7371 32 1 2.2762 2.0197 -1.2538 33 1 1.4796 2.2416 -2.8300 34 1 0.5744 1.5432 -1.4658 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063067207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:37 Heat of formation + Delta-G solvation = -9.506525 kcal Electronic energy + Delta-G solvation = -13655.183338 eV Core-core repulsion = 11587.421709 eV Total energy + Delta-G solvation = -2067.761630 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.69709 -35.75207 -33.44355 -32.94940 -29.33254 -28.05495 -27.14499 -25.96915 -22.53862 -21.94316 -19.25262 -18.11316 -17.05393 -16.48587 -16.09564 -15.39470 -14.50847 -14.41843 -14.07086 -13.92677 -13.52372 -13.01780 -12.94101 -12.83692 -12.53218 -12.31119 -12.28519 -12.16335 -11.84365 -11.63632 -11.47406 -11.35352 -11.14185 -10.66237 -10.51545 -8.76607 -8.10828 -6.19784 1.38685 1.40114 1.50283 2.41733 3.18305 3.41735 3.86564 3.97632 4.15191 4.46251 4.48243 4.64030 4.77923 4.85902 4.89029 4.92567 5.00273 5.07531 5.10267 5.16497 5.18775 5.25646 5.31871 5.37984 5.50705 5.56026 5.64992 5.83338 5.93882 6.22748 6.48324 6.86230 6.99529 7.48492 8.95890 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.045830 B = 0.012365 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.801866 B = 2263.837101 C = 2599.935668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.203 3.797 3 H -0.005 1.005 4 C -0.529 4.529 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.531 5.531 13 C 0.057 3.943 14 C -0.122 4.122 15 C -0.125 4.125 16 C 0.081 3.919 17 C -0.116 4.116 18 C -0.161 4.161 19 H 0.016 0.984 20 H 0.048 0.952 21 H 0.037 0.963 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 -0.992 -10.185 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.012 0.988 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.256 5.256 13 C -0.071 4.071 14 C -0.160 4.160 15 C -0.163 4.163 16 C -0.008 4.008 17 C -0.174 4.174 18 C -0.218 4.218 19 H 0.036 0.964 20 H 0.067 0.933 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.222 -1.303 -10.122 10.702 hybrid contribution 0.549 0.424 1.585 1.731 sum 3.771 -0.879 -8.537 9.374 Atomic orbital electron populations 1.21652 0.97890 0.98837 0.98279 1.19353 0.92389 0.92145 0.86578 0.98761 1.21690 1.31021 1.12385 0.91635 0.92451 1.25685 0.95451 0.95821 1.01765 1.70051 1.37813 1.24214 1.23820 0.85608 0.78008 0.79084 0.79257 1.20227 1.20917 1.19511 1.63641 1.20908 1.36694 1.04337 1.22769 0.88842 0.99023 0.96475 1.22715 0.99816 0.98052 0.95397 1.22834 0.94350 0.97580 1.01550 1.21900 0.95969 0.90959 0.91980 1.21691 0.98001 1.00866 0.96813 1.22423 1.01556 0.97126 1.00716 0.96430 0.93328 0.94400 0.93124 0.95772 0.92613 0.90145 0.89998 0.88768 0.92436 0.94115 0.90899 0.92431 0.94889 0.90979 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.52 8.28 71.98 0.60 -4.92 16 2 C 0.20 10.46 1.65 44.17 0.07 10.53 16 3 H 0.00 -0.28 5.21 -2.39 -0.01 -0.29 16 4 C -0.53 -29.79 7.48 25.60 0.19 -29.59 16 5 H 0.06 3.21 6.13 -2.91 -0.02 3.19 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.98 11.46 21.45 0.25 -53.74 16 8 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 N -0.53 -23.14 4.65 -815.97 -3.79 -26.93 16 13 C 0.06 2.30 5.14 86.77 0.45 2.75 16 14 C -0.12 -3.62 7.08 31.98 0.23 -3.40 16 15 C -0.12 -3.65 6.01 31.77 0.19 -3.46 16 16 C 0.08 2.87 0.90 3.87 0.00 2.88 16 17 C -0.12 -3.47 8.70 71.98 0.63 -2.85 16 18 C -0.16 -5.92 6.95 71.98 0.50 -5.42 16 19 H 0.02 0.88 8.10 -2.39 -0.02 0.86 16 20 H 0.05 2.68 6.43 -2.39 -0.02 2.66 16 21 H 0.04 1.70 5.26 -2.39 -0.01 1.69 16 22 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 23 H 0.02 1.09 7.13 -2.38 -0.02 1.07 16 24 H 0.06 2.30 7.67 -2.39 -0.02 2.28 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.09 2.18 7.83 -2.39 -0.02 2.17 16 28 H 0.06 1.73 7.81 -2.38 -0.02 1.71 16 29 H 0.04 1.33 7.44 -2.39 -0.02 1.31 16 30 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 1.35 6.67 -2.39 -0.02 1.33 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 2.36 4.56 -2.39 -0.01 2.35 16 Total: -1.00 -61.27 253.72 2.84 -58.43 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.06 Total: 7.89 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.30 Total: -32.39 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.54 Total: -80.67 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -61.27 2.84 -58.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063067207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.919 kcal (2) G-P(sol) polarization free energy of solvation -61.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds