Wall clock time and date at job start Mon Mar 30 2020 02:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47007 * 2 1 4 4 C 1.46902 * 110.99980 * 68.98844 * 3 2 1 5 5 C 1.52993 * 109.47489 * 70.54737 * 4 3 2 6 6 C 1.53003 * 117.50020 * 243.36271 * 5 4 3 7 7 C 1.52999 * 117.50219 * 174.70266 * 5 4 3 8 8 C 1.46895 * 110.99977 * 305.02971 * 3 2 1 9 9 H 1.09003 * 109.47493 * 63.95691 * 8 3 2 10 10 C 1.53008 * 109.46958 * 183.95306 * 8 3 2 11 11 C 1.50697 * 109.47214 * 303.95137 * 8 3 2 12 12 H 1.07994 * 120.00266 * 335.07788 * 11 8 3 13 13 C 1.37881 * 119.99963 * 155.07223 * 11 8 3 14 14 N 1.31518 * 119.99710 * 355.37216 * 13 11 8 15 15 Si 1.86797 * 120.00061 * 175.36305 * 13 11 8 16 16 H 1.48496 * 109.47252 * 90.00452 * 15 13 11 17 17 H 1.48507 * 109.46932 * 210.00708 * 15 13 11 18 18 H 1.48499 * 109.47030 * 330.00432 * 15 13 11 19 19 H 1.08999 * 109.47210 * 185.20791 * 1 2 3 20 20 H 1.09007 * 109.46856 * 305.20471 * 1 2 3 21 21 H 1.08996 * 109.47069 * 65.20672 * 1 2 3 22 22 H 1.08999 * 109.47218 * 240.00170 * 2 1 3 23 23 H 1.09004 * 109.47287 * 120.00170 * 2 1 3 24 24 H 1.08994 * 109.47031 * 190.55322 * 4 3 2 25 25 H 1.09002 * 109.46940 * 310.54352 * 4 3 2 26 26 H 1.09003 * 115.55253 * 29.02903 * 5 4 3 27 27 H 1.09001 * 117.50044 * 359.97438 * 6 5 4 28 28 H 1.09001 * 117.49893 * 145.02173 * 6 5 4 29 29 H 1.08997 * 117.50318 * 214.98344 * 7 5 4 30 30 H 1.09000 * 117.49644 * 359.97438 * 7 5 4 31 31 H 1.08990 * 109.47265 * 293.38872 * 10 8 3 32 32 H 1.09004 * 109.46716 * 53.38781 * 10 8 3 33 33 H 1.08994 * 109.46994 * 173.38526 * 10 8 3 34 34 H 0.96996 * 120.00260 * 5.33343 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7315 2.0453 1.2803 5 6 2.6208 1.4491 2.3731 6 6 1.9297 0.7156 3.5244 7 6 2.5604 2.0901 3.7611 8 6 1.4530 2.1437 -1.1230 9 1 0.3720 2.2172 -1.0032 10 6 2.0599 3.5480 -1.1476 11 6 1.7682 1.4375 -2.4163 12 1 2.6260 0.7845 -2.4799 13 6 0.9614 1.6249 -3.5186 14 7 -0.1333 2.3467 -3.4171 15 14 1.4233 0.8539 -5.1561 16 1 0.8195 -0.4993 -5.2540 17 1 0.9165 1.7034 -6.2637 18 1 2.9011 0.7446 -5.2525 19 1 -0.3633 -1.0234 0.0933 20 1 -0.3633 0.5925 0.8398 21 1 -0.3633 0.4309 -0.9329 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.9314 3.1130 1.1914 25 1 0.6841 1.8922 1.5403 26 1 3.5842 1.0648 2.0378 27 1 0.8414 0.6581 3.5034 28 1 2.4386 -0.1510 3.9467 29 1 3.4838 2.1274 4.3389 30 1 1.8873 2.9369 3.8954 31 1 1.7346 4.1000 -0.2659 32 1 3.1474 3.4738 -1.1490 33 1 1.7303 4.0706 -2.0455 34 1 -0.3333 2.8107 -2.5891 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068946964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:55 Heat of formation + Delta-G solvation = 18.852416 kcal Electronic energy + Delta-G solvation = -13233.780912 eV Core-core repulsion = 11167.249019 eV Total energy + Delta-G solvation = -2066.531894 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 197.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.28957 -36.09309 -32.87160 -30.36354 -28.32465 -25.69954 -24.11863 -22.32144 -22.08281 -20.36501 -18.90055 -16.37557 -15.51827 -15.24825 -14.35038 -13.77185 -13.69317 -13.45065 -12.57709 -12.06273 -11.73304 -11.36225 -11.31085 -11.21001 -11.04571 -10.95258 -10.69093 -10.24120 -10.20917 -10.16036 -10.08220 -9.72121 -9.38069 -8.44528 -8.33954 -7.14355 -6.30379 -4.01504 3.44689 3.48927 3.64519 4.04500 4.53223 4.79057 5.11842 5.18317 5.40085 5.45354 5.74528 5.76918 5.96738 6.02715 6.08691 6.11742 6.22708 6.27346 6.34808 6.44816 6.56968 6.68242 6.75241 6.78637 6.99570 7.11095 7.22212 7.49917 7.98397 8.12742 8.46822 8.66777 8.93214 9.69794 11.05892 Molecular weight = 197.15amu Principal moments of inertia in cm(-1) A = 0.055022 B = 0.009666 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.762032 B = 2896.098333 C = 3071.919085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 N -0.527 5.527 4 C 0.073 3.927 5 C -0.132 4.132 6 C -0.187 4.187 7 C -0.186 4.186 8 C 0.191 3.809 9 H 0.008 0.992 10 C -0.132 4.132 11 C -0.576 4.576 12 H 0.055 0.945 13 C 0.018 3.982 14 N -0.916 5.916 15 Si 1.069 2.931 16 H -0.289 1.289 17 H -0.286 1.286 18 H -0.288 1.288 19 H 0.042 0.958 20 H 0.038 0.962 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.026 0.974 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.016 0.984 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.968 -2.044 9.495 10.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.057 4.057 3 N -0.251 5.251 4 C -0.055 4.055 5 C -0.150 4.150 6 C -0.224 4.224 7 C -0.224 4.224 8 C 0.084 3.916 9 H 0.026 0.974 10 C -0.190 4.190 11 C -0.615 4.615 12 H 0.073 0.927 13 C -0.186 4.186 14 N -0.553 5.553 15 Si 0.898 3.102 16 H -0.216 1.216 17 H -0.212 1.212 18 H -0.214 1.214 19 H 0.061 0.939 20 H 0.057 0.943 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.126 0.874 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.962 -2.257 7.851 8.689 hybrid contribution -0.403 0.263 1.770 1.835 sum 2.559 -1.993 9.621 10.153 Atomic orbital electron populations 1.22327 0.99409 1.00248 1.02169 1.21822 0.92156 0.90993 1.00738 1.62301 1.59321 1.02077 1.01394 1.21740 0.95287 0.98573 0.89921 1.22387 1.01318 1.02537 0.88773 1.23005 0.99820 0.95204 1.04347 1.22921 1.02587 0.96391 1.00464 1.19471 0.92696 0.90301 0.89094 0.97407 1.21950 1.00606 0.98170 0.98268 1.21845 1.14465 1.29996 0.95211 0.92682 1.25766 0.93220 0.96850 1.02729 1.70772 1.23614 1.30688 1.30257 0.83540 0.75359 0.75933 0.75369 1.21621 1.21178 1.21417 0.93896 0.94327 0.90906 0.90335 0.93264 0.90928 0.95570 0.87393 0.89342 0.89389 0.89255 0.89274 0.96493 0.93582 0.93271 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 9.10 37.16 0.34 -3.35 16 2 C 0.07 1.46 5.56 -3.82 -0.02 1.44 16 3 N -0.53 -11.42 4.54 -228.04 -1.03 -12.46 16 4 C 0.07 1.36 5.00 -3.83 -0.02 1.34 16 5 C -0.13 -2.05 4.92 -90.62 -0.45 -2.50 16 6 C -0.19 -2.51 10.18 -26.69 -0.27 -2.78 16 7 C -0.19 -2.41 10.25 -26.69 -0.27 -2.68 16 8 C 0.19 4.73 1.20 -68.86 -0.08 4.64 16 9 H 0.01 0.22 5.12 -51.93 -0.27 -0.04 16 10 C -0.13 -3.07 8.79 37.16 0.33 -2.74 16 11 C -0.58 -15.76 6.92 -34.44 -0.24 -15.99 16 12 H 0.05 1.55 7.48 -52.49 -0.39 1.15 16 13 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 14 N -0.92 -27.12 13.62 55.43 0.76 -26.36 16 15 Si 1.07 25.15 29.91 -169.99 -5.08 20.07 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 19 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 20 H 0.04 0.74 6.28 -51.93 -0.33 0.41 16 21 H 0.07 1.74 6.53 -51.93 -0.34 1.40 16 22 H 0.08 1.75 6.96 -51.93 -0.36 1.39 16 23 H 0.05 0.90 7.23 -51.93 -0.38 0.53 16 24 H 0.07 1.37 5.80 -51.93 -0.30 1.07 16 25 H 0.03 0.50 5.88 -51.93 -0.31 0.19 16 26 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.02 0.34 6.47 -51.93 -0.34 0.01 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.27 7.94 6.66 -40.82 -0.27 7.67 16 LS Contribution 266.19 15.07 4.01 4.01 Total: -1.00 -28.44 266.19 -7.58 -36.03 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.45 Total: 0.93 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: -0.78 Total: -22.22 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: -0.28 Total: -38.82 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.44 -7.58 -36.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068946964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.879 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds