Wall clock time and date at job start Mon Mar 30 2020 02:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86798 * 119.99645 * 2 1 4 4 H 1.48501 * 109.47059 * 84.70094 * 3 2 1 5 5 H 1.48500 * 109.46834 * 204.70180 * 3 2 1 6 6 H 1.48502 * 109.47317 * 324.70076 * 3 2 1 7 7 C 1.39925 * 119.99999 * 179.72218 * 2 1 3 8 8 H 1.08005 * 120.00252 * 332.22666 * 7 2 1 9 9 C 1.41115 * 120.00036 * 152.22807 * 7 2 1 10 10 C 1.41336 * 120.29687 * 137.32181 * 9 7 2 11 11 O 1.35655 * 120.19438 * 359.97438 * 10 9 7 12 12 C 1.38324 * 119.60588 * 180.02562 * 10 9 7 13 13 C 1.38373 * 120.21413 * 359.97298 * 12 10 9 14 14 C 1.38719 * 120.61172 * 0.02562 * 13 12 10 15 15 C 1.37684 * 120.39231 * 359.75679 * 14 13 12 16 16 Cl 1.73599 * 120.11976 * 180.27878 * 15 14 13 17 17 H 0.97000 * 119.99558 * 175.46760 * 1 2 3 18 18 H 0.96698 * 113.99387 * 90.00388 * 11 10 9 19 19 H 1.07996 * 119.89191 * 180.02562 * 12 10 9 20 20 H 1.08002 * 119.69687 * 180.02562 * 13 12 10 21 21 H 1.08005 * 119.80578 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3782 2.1111 1.3941 5 1 3.5918 1.4105 -0.5851 6 1 1.5006 2.6178 -0.8090 7 6 2.0084 -1.2118 0.0059 8 1 1.5618 -2.0912 0.4460 9 6 3.2977 -1.2849 -0.5632 10 6 4.3277 -1.9959 0.0935 11 8 4.0836 -2.6129 1.2767 12 6 5.5863 -2.0580 -0.4769 13 6 5.8357 -1.4283 -1.6836 14 6 4.8314 -0.7281 -2.3359 15 6 3.5683 -0.6539 -1.7929 16 17 2.3150 0.2182 -2.6188 17 1 -0.4849 -0.8375 -0.0664 18 1 3.7804 -3.5269 1.1884 19 1 6.3766 -2.6003 0.0207 20 1 6.8214 -1.4825 -2.1217 21 1 5.0406 -0.2411 -3.2769 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075555623.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:31 Heat of formation + Delta-G solvation = -37.687362 kcal Electronic energy + Delta-G solvation = -10515.511493 eV Core-core repulsion = 8382.019070 eV Total energy + Delta-G solvation = -2133.492423 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 198.019 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.43970 -35.91879 -34.82499 -33.70806 -30.21675 -28.66464 -24.81154 -21.45201 -20.69123 -18.34700 -17.26521 -15.17869 -14.87444 -14.40846 -14.02689 -13.25961 -12.91048 -12.37753 -12.17030 -11.51806 -11.21083 -10.73705 -10.28109 -10.10595 -9.84097 -9.48042 -9.21327 -8.79492 -7.68178 -7.59758 -7.19896 -4.54487 2.29113 2.44717 3.27347 3.34663 3.49192 3.59361 4.13693 4.42210 4.98584 5.43725 5.83479 6.13924 6.19847 6.66479 6.89349 7.17954 7.34821 7.55351 7.60053 7.69243 8.11374 8.30463 8.66979 8.84229 10.01304 Molecular weight = 198.02amu Principal moments of inertia in cm(-1) A = 0.035757 B = 0.020885 C = 0.016159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.867398 B = 1340.368321 C = 1732.376943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.069 3.931 3 Si 1.045 2.955 4 H -0.287 1.287 5 H -0.256 1.256 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.077 3.923 10 C 0.007 3.993 11 O -0.486 6.486 12 C -0.108 4.108 13 C -0.222 4.222 14 C -0.079 4.079 15 C -0.120 4.120 16 Cl -0.090 7.090 17 H 0.287 0.713 18 H 0.360 0.640 19 H 0.104 0.896 20 H 0.106 0.894 21 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -1.104 -2.625 6.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.153 4.153 3 Si 0.870 3.130 4 H -0.215 1.215 5 H -0.180 1.180 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.100 0.900 9 C 0.073 3.927 10 C -0.038 4.038 11 O -0.293 6.293 12 C -0.127 4.127 13 C -0.241 4.241 14 C -0.098 4.098 15 C -0.147 4.147 16 Cl -0.062 7.062 17 H 0.098 0.902 18 H 0.212 0.788 19 H 0.122 0.878 20 H 0.124 0.876 21 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.044 1.119 -2.390 5.693 hybrid contribution -0.201 -2.184 -0.298 2.214 sum 4.843 -1.065 -2.689 5.641 Atomic orbital electron populations 1.70542 1.08453 1.32680 1.30367 1.27091 0.95276 1.03872 0.89094 0.83800 0.77778 0.73873 0.77525 1.21511 1.17971 1.20285 1.20192 0.99358 0.98846 1.36311 0.89959 1.17818 0.93463 0.91773 0.89636 1.18612 0.91657 1.05692 0.87864 1.84776 1.88523 1.28954 1.27066 1.21033 0.96309 1.00175 0.95198 1.20170 0.98290 1.07620 0.98063 1.20551 0.91529 0.98730 0.98947 1.20766 0.89433 1.08802 0.95737 1.98198 1.54924 1.75342 1.77708 0.90178 0.78750 0.87773 0.87613 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.61 13.66 55.55 0.76 -20.86 14 2 C 0.07 1.86 4.09 -17.32 -0.07 1.78 14 3 Si 1.05 25.40 24.98 -169.99 -4.25 21.16 14 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 14 5 H -0.26 -6.17 5.74 56.52 0.32 -5.85 14 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 7 C -0.52 -14.03 8.57 -37.86 -0.32 -14.35 14 8 H 0.08 2.29 8.06 -52.48 -0.42 1.86 14 9 C 0.08 1.97 4.63 -106.64 -0.49 1.47 14 10 C 0.01 0.17 6.74 -38.37 -0.26 -0.09 14 11 O -0.49 -10.67 12.96 -18.67 -0.24 -10.91 14 12 C -0.11 -2.26 9.97 -39.50 -0.39 -2.65 14 13 C -0.22 -4.44 10.04 -39.35 -0.39 -4.84 14 14 C -0.08 -1.67 9.80 -39.61 -0.39 -2.06 14 15 C -0.12 -2.88 4.47 -38.80 -0.17 -3.06 14 16 Cl -0.09 -2.09 23.19 -51.86 -1.20 -3.29 14 17 H 0.29 7.54 8.73 -40.82 -0.36 7.18 14 18 H 0.36 6.20 9.06 45.56 0.41 6.62 14 19 H 0.10 1.88 8.06 -52.49 -0.42 1.46 14 20 H 0.11 1.78 8.06 -52.49 -0.42 1.36 14 21 H 0.11 1.98 8.06 -52.48 -0.42 1.56 14 LS Contribution 203.06 15.07 3.06 3.06 Total: -1.00 -28.05 203.06 -4.88 -32.93 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -0.51 Total: 1.70 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.50 Total: -23.79 kcal Atomic # 7 Polarization: -21.61 SS G_CDS: 0.76 Total: -20.86 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.24 Total: -10.91 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.25 Total: 21.16 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -1.20 Total: -3.29 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -28.05 -4.88 -32.93 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555623.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.756 kcal (2) G-P(sol) polarization free energy of solvation -28.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds