Wall clock time and date at job start Mon Mar 30 2020 02:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86800 * 120.00076 * 2 1 4 4 H 1.48504 * 109.47266 * 274.65450 * 3 2 1 5 5 H 1.48502 * 109.47274 * 34.65286 * 3 2 1 6 6 H 1.48500 * 109.47440 * 154.65256 * 3 2 1 7 7 C 1.39930 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00249 * 162.36678 * 7 2 1 9 9 C 1.41152 * 120.00165 * 342.35867 * 7 2 1 10 10 C 1.40733 * 120.28020 * 335.08797 * 9 7 2 11 11 C 1.37564 * 119.79743 * 179.97438 * 10 9 7 12 12 Cl 1.73601 * 119.80946 * 179.97438 * 11 10 9 13 13 C 1.38953 * 120.38138 * 0.02562 * 11 10 9 14 14 C 1.38274 * 120.58122 * 359.73783 * 13 11 10 15 15 C 1.38410 * 120.18609 * 0.51871 * 14 13 11 16 16 O 1.35650 * 120.19315 * 179.76779 * 15 14 13 17 17 H 0.97002 * 119.99484 * 0.02562 * 1 2 3 18 18 H 1.08002 * 120.09861 * 359.94911 * 10 9 7 19 19 H 1.08004 * 119.70957 * 180.02562 * 13 11 10 20 20 H 1.08001 * 119.91024 * 180.28257 * 14 13 11 21 21 H 0.96707 * 114.00137 * 269.71773 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3918 2.1033 -1.3955 5 1 1.4928 2.6223 0.7961 6 1 3.5860 1.4138 0.5994 7 6 2.0083 -1.2118 0.0005 8 1 3.0503 -1.2339 -0.2828 9 6 1.3524 -2.4054 0.3715 10 6 0.2249 -2.3635 1.2126 11 6 -0.4070 -3.5327 1.5675 12 17 -1.7976 -3.4815 2.6056 13 6 0.0619 -4.7546 1.1007 14 6 1.1654 -4.8137 0.2697 15 6 1.8226 -3.6524 -0.0981 16 8 2.9080 -3.7105 -0.9096 17 1 -0.4849 0.8401 -0.0004 18 1 -0.1429 -1.4163 1.5787 19 1 -0.4429 -5.6659 1.3858 20 1 1.5179 -5.7689 -0.0905 21 1 3.7478 -3.7961 -0.4378 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083593187.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:34 Heat of formation + Delta-G solvation = -61.670260 kcal Electronic energy + Delta-G solvation = -10223.065678 eV Core-core repulsion = 8088.533279 eV Total energy + Delta-G solvation = -2134.532400 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 198.019 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.02614 -37.63451 -36.63504 -35.52817 -31.69363 -30.13932 -27.22408 -23.22604 -22.59465 -19.40745 -18.76147 -17.26965 -16.52000 -16.09625 -15.81778 -14.67672 -14.45047 -13.85724 -13.37297 -13.22552 -12.97546 -12.78305 -12.34582 -12.00127 -11.79830 -11.58745 -11.07537 -10.89945 -9.54464 -9.13307 -8.70508 -6.41450 0.65885 0.86795 1.38655 1.46381 1.50251 1.54653 2.18225 2.59209 3.42254 3.87070 4.36178 4.59952 5.00565 5.04726 5.24047 5.34632 5.63559 5.82110 5.86798 6.12761 6.39348 6.71738 6.78718 7.32547 8.24166 Molecular weight = 198.02amu Principal moments of inertia in cm(-1) A = 0.033643 B = 0.014445 C = 0.010407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.064991 B = 1937.937193 C = 2689.974796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.065 3.935 10 C -0.172 4.172 11 C -0.017 4.017 12 Cl -0.099 7.099 13 C -0.225 4.225 14 C -0.101 4.101 15 C -0.032 4.032 16 O -0.499 6.499 17 H 0.292 0.708 18 H 0.115 0.885 19 H 0.130 0.870 20 H 0.135 0.865 21 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.882 -1.721 2.602 3.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.178 1.178 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.062 3.938 10 C -0.192 4.192 11 C -0.043 4.043 12 Cl -0.071 7.071 13 C -0.245 4.245 14 C -0.120 4.120 15 C -0.077 4.077 16 O -0.308 6.308 17 H 0.103 0.897 18 H 0.133 0.867 19 H 0.148 0.852 20 H 0.153 0.847 21 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.122 -1.516 2.227 2.918 hybrid contribution 0.312 0.652 0.378 0.816 sum 1.434 -0.864 2.605 3.097 Atomic orbital electron populations 1.69878 1.09160 1.31076 1.34113 1.26874 0.95524 1.04880 0.91119 0.85118 0.79274 0.75532 0.79387 1.18848 1.18987 1.17790 1.19698 0.98697 0.91818 1.40028 0.89691 1.18183 0.92337 0.93508 0.89793 1.21053 0.99611 0.96212 1.02366 1.20884 0.90604 0.95589 0.97265 1.98252 1.42847 1.98995 1.66994 1.20420 1.01786 0.95505 1.06748 1.21055 0.96410 0.97377 0.97166 1.18844 0.94867 0.92429 1.01593 1.84701 1.15797 1.95891 1.34441 0.89731 0.86731 0.85177 0.84677 0.76668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.22 10.98 21.83 0.24 -41.98 14 2 C 0.03 1.59 5.14 85.25 0.44 2.02 14 3 Si 0.99 37.19 29.59 68.60 2.03 39.22 14 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 14 5 H -0.27 -9.54 7.11 99.48 0.71 -8.83 14 6 H -0.25 -9.28 7.11 99.48 0.71 -8.58 14 7 C -0.47 -24.92 8.71 23.40 0.20 -24.71 14 8 H 0.09 4.28 7.65 -2.91 -0.02 4.26 14 9 C 0.07 3.46 5.58 -21.20 -0.12 3.34 14 10 C -0.17 -8.95 8.45 22.72 0.19 -8.76 14 11 C -0.02 -0.79 6.31 22.28 0.14 -0.64 14 12 Cl -0.10 -3.96 28.94 -2.72 -0.08 -4.04 14 13 C -0.22 -9.54 9.82 22.45 0.22 -9.32 14 14 C -0.10 -4.32 9.97 22.32 0.22 -4.10 14 15 C -0.03 -1.53 6.74 23.06 0.16 -1.37 14 16 O -0.50 -21.66 12.79 -89.65 -1.15 -22.81 14 17 H 0.29 13.59 8.30 -92.71 -0.77 12.82 14 18 H 0.11 6.26 6.19 -2.91 -0.02 6.24 14 19 H 0.13 4.74 8.06 -2.91 -0.02 4.72 14 20 H 0.14 4.83 8.06 -2.91 -0.02 4.80 14 21 H 0.38 12.53 9.06 -74.05 -0.67 11.86 14 Total: -1.00 -57.91 211.65 3.09 -54.82 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.59 Total: 18.33 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 1.45 Total: -43.54 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.24 Total: -41.98 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -1.15 Total: -22.81 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Atomic # 17 Polarization: -3.96 SS G_CDS: -0.08 Total: -4.04 kcal Total: -57.91 3.09 -54.82 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083593187.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.854 kcal (2) G-P(sol) polarization free energy of solvation -57.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds